------------------------------------------------------------ clusterID = 1 # of genes = 113 -------------------------- [1] AB002318_at "KIAA0320 gene, partial cds" [2] D17716_at GB DEF = N-acetylglucosaminyltransferase V [3] D31766_at PUTATIVE GLUCOSAMINE-6-PHOSPHATE ISOMERASE [4] D31797_at CD40LG CD40 antigen ligand (hyper IgM syndrome) [5] D32001_at "GB DEF = HuSAA1g gene for serum amyloid A1 gamma, exon 3 and intron 3" [6] D38145_at Prostacyclin synthase [7] D42123_at ESP1/CRP2 [8] D43642_at YL-1 mRNA for YL-1 protein (nuclear protein with DNA-binding ability) [9] D55640_at "GB DEF = Monocyte PABL (pseudoautosomal boundary-like sequence) mRNA, clone Mo2" [10] D63485_at KIAA0151 gene [11] D63851_at Unc-18 homologue [12] D64158_at "ATP binding protein associated with cell differentiation, partial cds" [13] D83018_at Nel-related protein 2 [14] D83779_at KIAA0195 gene [15] D88213_at Retina-specific amine oxidase [16] D90276_at CGM7 Carcinoembryonic antigen gene family member 7 [17] HG1155-HT4822_at "Colony-Stimulating Factor 1, Macrophage, Alt. Splice 3" [18] HG2320-HT2416_at "Integrin, Beta 3 Subunit" [19] HG2325-HT2421_at "Retinoic Acid Receptor, Gamma 2" [20] HG3355-HT3532_at Peroxisome Proliferator Activated Receptor (Gb:Z30972) [21] HG3454-HT3647_at Zinc Finger Protein 20 [22] HG3492-HT3686_at Uncoupling Protein Ucp [23] HG4036-HT4306_at Retinoblastoma 1 [24] HG4114-HT4384_at Olfactory Receptor Or17-209 [25] HG4167-HT4437_at "Nuclear Factor 1, A Type" [26] HG4272-HT4542_at Hepatocyte Growth Factor Receptor [27] HG4533-HT4938_at "Kallistatin, Protease Inhibitor 4" [28] J02906_at CYTOCHROME P450 IIF1 [29] J03161_at SRF Serum response factor (c-fos serum response element-binding transcription factor) [30] J03890_rna1_at SP-C1 gene (pulmonary surfactant protein SP-C) extracted from Human pulmonary surfactant protein C (SP-C) and pulmonary surfactant protein C1 (SP-C1) genes [31] J04177_at "COL11A1 Collagen, type XI, alpha 1" [32] L42563_at ATP1AL1 ATP-driven ion pump [33] M16405_at MUSCARINIC ACETYLCHOLINE RECEPTOR M4 [34] M24248_at "MYL3 Myosin, light polypeptide 3, alkali; ventricular, skeletal, slow" [35] M26576_cds2_at COL4A1 gene (alpha-1 type IV collagen) extracted from Human alpha-1 collagen type IV gene [36] M29581_at ZNF8 Zinc finger protein 8 (clone HF.18) [37] M31328_at "GNB3 Guanine nucleotide binding protein (G protein), beta polypeptide 3" [38] M35878_at INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 3 PRECURSOR [39] M60165_cds1_at HLA-DQB1 gene extracted from Human guanine nucleotide-binding regulatory protein (Go-alpha) gene [40] M86546_at PBX1 PBX1a and PBX1b [41] M88468_at MVK Mevalonate kinase [42] M96859_at DPP6 Dipeptidylpeptidase VI [43] M97925_rna1_at Defensin 5 gene [44] S73149_at "GB DEF = Insulin-like growth factor II {intron 7} [human, Genomic, 1702 nt]" [45] U05291_at FMOD Fibromodulin [46] U07223_at Beta2-chimaerin mRNA [47] U10686_at MAGE-11 antigen (MAGE11) gene [48] U15197_at "ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)" [49] U16282_at ELL mRNA [50] U17579_rna1_at "Growth hormone-releasing hormone receptor form b gene extracted from Human growth hormone-releasing hormone receptor gene, alternatively spliced forms a, b, and c, partial cds" [51] U17894_at "Alpha(1,2)fucosyltransferase" [52] U18548_at GB DEF = GPR12 G protein coupled-receptor gene [53] U19977_at Preprocarboxypeptidase A2 (proCPA2) mRNA [54] U36221_at Pancreatic zymogen granule membrane protein GP-2 mRNA [55] U37707_at DLG3 Homolog 3 of Drosophila large discs [56] U43030_at Cardiotrophin-1 (CTF1) mRNA [57] U44059_at GB DEF = Thyrotroph embryonic factor (TEF) mRNA [58] U49973_xpt1_at "ORF1; MER37; putative transposase similar to pogo element from Human Tigger1 transposable element, complete consensus sequence./ntype=DNA /annot=CDS" [59] U51127_at IRF5 Interferon regulatory factor 5 [60] U58130_at GB DEF = Bumetanide-sensitive Na-K-2Cl cotransporter (NKCC2) mRNA [61] U66048_at Clone 161455 breast expressed mRNA from chromosome X [62] U66578_at Purinergic receptor P2Y9 mRNA [63] U67674_at "SLC15A2 Solute carrier family 15 (H+/peptide transporter), member 2" [64] U70321_at Herpesvirus entry mediator mRNA [65] U71088_at MAP kinase kinase MEK5c mRNA [66] U72512_at "GB DEF = B-cell receptor associated protein (hBAP) alternatively spliced mRNA, partial 3'UTR" [67] U72517_at "GB DEF = Alternatively spliced variant C7f (C3f) mRNA, partial 3'UTR" [68] U75968_at CHL1 protein [69] U76010_at Putative zinc transporter ZnT-3 (ZnT-3) mRNA [70] U78793_at "GB DEF = Folate receptor alpha (hFR) mRNA, partial cds" [71] U81600_at "Paired-like homeodomain protein PRX-2 mRNA, partial cds" [72] U82303_at "GB DEF = Unknown protein mRNA, partial cds" [73] U83192_at Post-synaptic density protein 95 (PSD95) mRNA [74] U87408_at "Clone IMAGE:30008 unknown protein mRNA, partial cds" [75] U89336_cds3_at "RAGE gene (receptor for advanced glycosylation end products) extracted from Human HLA class III region containing NOTCH4 gene, partial sequence, homeobox PBX2 (HPBX) gene, receptor for advanced glycosylation end products (RAGE) gene, and 6 unidentified cds, complete sequence" [76] X12433_at PROTEIN PHPS1-2 [77] X12492_at CCAAT BOX-BINDING TRANSCRIPTION FACTOR 1 [78] X13444_at T-CELL SURFACE GLYCOPROTEIN CD8 BETA.3 CHAIN PRECURSOR [79] X52479_at "PRKCA Protein kinase C, alpha" [80] X56667_at "CALB2 Calbindin 2, (29kD, calretinin)" [81] X69699_at Pax8 mRNA [82] X69878_at FLT4 Fms-related tyrosine kinase 4 [83] X86570_at Acidic hair keratin 1 [84] X92521_at Clone rasi-1 matrix metalloproteinase RASI-1 mRNA [85] X92720_at Phosphoenolpyruvate carboxykinase [86] X98261_at "M-phase phosphoprotein, mpp5" [87] Y11710_rna1_at "Extracellular matrix protein collagen type XIV, C-terminus" [88] Y14140_at GB DEF = G protein gene encoding beta 3 subunit exon 1 and promoter [89] Z30425_at Orphan nuclear hormone receptor [90] Z71460_at Vacuolar-type H(+)-ATPase 115 kDa subunit [91] M24900_at V-ERBA RELATED PROTEIN EAR-1 [92] X55005_rna1_at C-erbA-1 mRNA for thyroid hormone receptor alpha [93] L10338_s_at "SCN1B Sodium channel, voltage-gated, type I, beta polypeptide" [94] L12060_s_at "RARG Retinoic acid receptor, gamma 1" [95] S69265_s_at "Neuron-specific RNA recognition motifs (RRMs)-containing protein [human, hippocampus, mRNA, 1992 nt]" [96] M74587_rna1_s_at Insulin-like growth factor binding protein (hIGFBP1) gene [97] U16720_rna1_s_at Interleukin 10 (IL10) gene [98] X15673_s_at GB DEF = PTR2 mRNA for repetitive sequence [99] S49592_s_at "Transcription factor E2F like protein [human, mRNA, 2492 nt]" [100] U41068_cds2_s_at "Retinoid X receptor beta (RXRbeta) gene, partial 3' transcript, and collagen alpha2(XI) (COL11A2) gene" [101] U59831_rna1_s_at "Transcription factor, forkhead related activator 4 (FREAC-4) gene" [102] U65416_rna1_s_at MHC class I molecule (MICB) gene [103] X66276_s_at "MYBPC1 Myosin-binding protein C, slow-type" [104] Z11899_s_at POU5F1 Octamer binding protein 3 [105] Z35402_rna1_s_at "Gene encoding E-cadherin, exon 3 and joined CDS" [106] HG881-HT881_at "Mucin 6, Gastric (Gb:L07518)" [107] J05412_at "REG1A Regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein)" [108] Z83336_at GB DEF = HH2B/d gene [109] X52889_at "MYH7 Myosin, heavy polypeptide 7, cardiac muscle, beta" [110] J00212_f_at "IFNA21 Interferon, alpha 21" [111] X13930_f_at CYTOCHROME P450 IIA6 [112] L78833_cds4_at "Ifp35 gene extracted from Human BRCA1, Rho7 and vatI genes, and ipf35 gene, partial cds" [113] Z17240_at HMG2 High-mobility group (nonhistone chromosomal) protein 2 ------------------------------------------------------------ clusterID = 2 # of genes = 39 -------------------------- [1] AD000092_cds1_at "Hypothetical human serine-threonine protein kinase R31240_1 gene extracted from Homo sapiens DNA from chromosome 19p13.2 cosmids R31240, R30272 and R28549 containing the EKLF, GCDH, CRTC, and RAD23A genes, genomic sequence" [2] AF005775_at "Caspase-like apoptosis regulatory protein 2 (clarp) mRNA, alternatively spliced" [3] D13897_rna2_at Peptide YY precursor gene extracted from Human DNA for peptide YY [4] D45371_at ApM1 mRNA for GS3109 (novel adipose specific collagen-like factor) [5] D84239_at IgG Fc binding protein [6] D87469_at "KIAA0279 gene, partial cds" [7] HG4662-HT5075_at "Omega Light Chain, Immunoglobulin Lambda Light Chain Related" [8] K02765_at COMPLEMENT C3 PRECURSOR [9] L16895_at LOX Lysyl oxidase [10] L41143_at GB DEF = Expressed pseudo TCTA mRNA at t(1;3) translocation site [11] M13207_at CSF2 Colony-stimulating factor 2 (GM-CSF) [12] M24439_at "ALPL Alkaline phosphatase, liver/bone/kidney" [13] M27161_at "CD8A CD8 antigen, alpha polypeptide (p32)" [14] M37245_at "GB DEF = Ig superfamily cytotoxic T-lymphocyte-associated protein (CTLA-4) gene, last exon" [15] M80899_at AHNAK AHNAK nucleoprotein (desmoyokin) [16] M81780_cds5_at "SMPD1 gene (acid sphingomyelinase) extracted from Homo sapiens acid sphingomyelinase (SMPD1) gene, ORF's 1-3's" [17] S77356_at "GB DEF = Transcript ch21=oligomycin sensitivity conferral protein oscp homolog [human, RF1,RF48 stomach cancer cell lines, mRNA, 262 nt]" [18] U01120_at G6PT Glucose-6-phosphatase [19] U60062_at "FEZ1-T mRNA, alternatively spliced form" [20] U60115_at Skeletal muscle LIM-protein SLIM1 mRNA [21] U60519_at Apoptotic cysteine protease Mch4 (Mch4) mRNA [22] U63717_at Osteoclast stimulating factor mRNA [23] U66616_at SWI/SNF complex 170 KDa subunit (BAF170) mRNA [24] U70867_at Prostaglandin transporter hPGT mRNA [25] X15880_at "COL6A1 Collagen, type VI, alpha 1" [26] X53414_at AGXT Alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase) [27] X61373_at "GB DEF = Microtubule-associated protein tau (tau) gene, alternatively spliced products, exon 13/14 and complete cds" [28] X85106_at Ribosomal S6 kinase [29] Z18951_at "CAV Caveolin, caveolae protein, 22kD" [30] HG2157-HT2227_at "Mucin 4, Tracheobronchial" [31] D79984_s_at KIAA0162 gene [32] HG880-HT880_at "Mucin 6, Gastric (Gb:L07517)" [33] M62403_s_at IGFBP4 Insulin-like growth factor-binding protein 4 [34] U32674_s_at "GB DEF = Orphan receptor GPR9 (GPR9) gene, partial cds" [35] U86759_s_at GB DEF = Netrin-2 like protein (NTN2l) mRNA [36] HG4677-HT5102_s_at "Oncogene Ret/Ptc2, Fusion Activated" [37] HG2147-HT2217_r_at "Mucin 3, Intestinal (Gb:M55405)" [38] X87344_cds10_r_at "DMA gene extracted from H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2, TAP1, LMP7, TAP2, DOB, DQB2 and RING8, 9, 13 and 14 genes" [39] U88898_r_at "GB DEF = Endogenous retroviral H protease/integrase-derived ORF1 mRNA, and putative envelope protein mRNA, partial cds" ------------------------------------------------------------ clusterID = 3 # of genes = 42 -------------------------- [1] AB002559_at Hunc18b2 [2] AF006087_at Arp2/3 protein complex subunit p20-Arc (ARC20) mRNA [3] D16217_at CAST Calpastatin [4] D87468_at "KIAA0278 gene, partial cds" [5] HG2059-HT2114_at "Arrestin, Beta 2" [6] HG4018-HT4288_at Opioid-Binding Cell Adhesion Molecule [7] HG908-HT908_at Mg61 Protein (Gb:L08239) [8] J02888_at NMOR2 Quinone oxidoreductase (NQO2) [9] J04162_at "FCGR3 Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" [10] J05272_at IMPDH1 IMP (inosine monophosphate) dehydrogenase 1 [11] M14676_at "FYN FYN oncogene related to SRC, FGR, YES" [12] M23254_at "CAPN2 Calpain, large polypeptide L2" [13] M63167_at AKT1 V-akt murine thymoma viral oncogene homolog 1 [14] M87503_at TRANSCRIPTIONAL REGULATOR ISGF3 GAMMA SUBUNIT [15] U06681_at Clone CCA12 mRNA containing CCA trinucleotide repeat [16] U10868_at ALDH7 Aldehyde dehydrogenase 7 [17] U34877_at Biliverdin-IXalpha reductase mRNA [18] U51336_at "Inositol 1,3,4-trisphosphate 5/6-kinase mRNA" [19] U56417_at Lysophosphatidic acid acyltransferase-alpha mRNA [20] U58681_at GB DEF = Neurogenic basic-helix-loop-helix protein (NeuroD2) gene [21] U70451_at Myleoid differentiation primary response protein MyD88 mRNA [22] U79294_at Clone 23748 mRNA [23] X06985_at HMOX1 Heme oxygenase (decycling) 1 [24] X07979_at "ITGB1 Integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)" [25] X13973_at RNH Ribonuclease/angiogenin inhibitor [26] X15525_rna1_at Lysosomal acid phosphatase gene (EC 3.1.3.2) Exon 1 (and joined CDS) [27] X16663_at HEMATOPOIETIC LINEAGE CELL SPECIFIC PROTEIN [28] X55079_rna1_at GAA gene extracted from Human lysosomal alpha-glucosidase gene exon 1 [29] X59892_at TRYPTOPHANYL-TRNA SYNTHETASE [30] X69910_at P63 mRNA for transmembrane protein [31] X96381_rna1_at "Erm gene, exon 2,3,4,5 (and joined CDS)" [32] X98411_at GB DEF = Myosin-IE [33] X99728_at "GB DEF = NDUFV3 gene, exon 3" [34] L38593_s_at "GB DEF = Integral membrane protein (NRAMP1) gene, exon 5" [35] HG1140-HT4817_s_at "Collagen, Type Vi, Alpha 2, Alt. Splice 2" [36] L07807_s_at DNM1 Dynamin 1 [37] X07438_s_at GB DEF = DNA for cellular retinol binding protein (CRBP) exons 3 and 4 [38] X02875_s_at OIAS (2'-5') oligoadenylate synthetase [39] M81695_s_at "ITGAX Integrin, alpha X (antigen CD11C (p150), alpha polypeptide)" [40] U66711_rna1_s_at Ly-6-related protein (9804) gene [41] M31932_at "FCGR2A Fc fragment of IgG, low affinity IIa, receptor for (CD32)" [42] U01337_at ARAF1 V-raf murine sarcoma 3611 viral oncogene homolog 1 ------------------------------------------------------------ clusterID = 4 # of genes = 80 -------------------------- [1] AFFX-HSAC07/X00351_5_at AFFX-HSAC07/X00351_5_at (endogenous control) [2] A28102_at GB DEF = GABAa receptor alpha-3 subunit [3] D25216_at KIAA0014 gene [4] D86965_at KIAA0210 gene [5] D87673_at Heat shock transcription factor 4 [6] HG1116-HT1116_at "Proliferating-Cell Nucleolar Antigen, 120 Kda" [7] HG1205-HT1205_at "Collagen, Type Iv, Alpha 2, N-Terminus" [8] HG2247-HT2332_at Major Intrinsic Protein [9] HG2566-HT4867_at "Microtubule-Associated Protein Tau, Alt. Splice 5, Exon 4a" [10] HG3162-HT3339_at Transcription Factor Iia [11] HG358-HT358_at "Homeotic Protein 7, Notch Group" [12] HG406-HT406_at "P97 Antigen, Melanoma-Specific" [13] HG4606-HT5011_at "Centractin, Alpha" [14] HG960-HT960_at Guanine Nucleotide Exchange Factor 1 [15] J00306_at Somatostatin I gene and flanks [16] L17327_at "Pre-T/NK cell associated protein (3B3) mRNA, 3' end" [17] L22214_at ADORA1 Adenosine receptor A1 [18] L27943_at CDA Cytidine deaminase [19] M21812_at "MYL2 Myosin, light polypeptide 2, regulatory, cardiac, slow" [20] M62302_at Growth/differentiation factor 1 (GDF-1) mRNA [21] M63175_at AMFR Autocrine motility factor receptor [22] S45630_at CRYAB Crystallin alpha-B [23] S72487_at Platelet-derived endothelial cell growth factor mRNA [24] U01038_at PLK mRNA [25] U02619_at TFIIIC Box B-binding subunit mRNA [26] U05659_at HSD17B3 Hydroxysteroid (17-beta) dehydrogenase 3 [27] U07132_at "Orphan receptor mRNA, partial cds" [28] U12471_cds1_at "Thrombospondin-p50 gene extracted from Human thrombospondin-1 gene, partial cds" [29] U12779_at MAP KINASE-ACTIVATED PROTEIN KINASE 2 [30] U23143_at "Mitochondrial serine hydroxymethyltransferase gene, nuclear encoded mitochondrion protein" [31] U38980_at "PMS8 mRNA (yeast mismatch repair gene PMS1 homologue), partial cds (C-terminal region)" [32] U40391_rna1_at Serotonin N-acetyltransferase gene [33] U43586_at "Kinase suppressor of ras-1 (KSR1) mRNA, partial cds" [34] U48263_at Pre-pro-orphanin FQ (OFQ) mRNA [35] U58766_at FX protein mRNA [36] U81599_at Homeodomain protein HOXB13 mRNA [37] U85992_at "Clone IMAGE:35527 unknown protein mRNA, partial cds" [38] X02750_at PROC Protein C (inactivator of coagulation factors Va and VIIIa) [39] X15393_rna1_at Motilin gene exon 2 (and joined CDS) [40] X62573_at "FCGR2B Fc fragment of IgG, low affinity IIb, receptor for (CD32)" [41] X73113_at Fast MyBP-C [42] X90763_at "Type I keratin, hHa5" [43] Y07847_at RRP22 protein [44] Y10376_at GB DEF = SIRP-beta1 [45] Z35307_at ECE1 Endothelin converting enzyme 1 [46] Z84721_cds2_at "Alpha-globin 1 gene extracted from Human DNA sequence from cosmid GG1 from a contig from the tip of the short arm of chromosome 16, spanning 2Mb of 16p13.3 Contains alpha and zeta globin genes and ESTs" [47] D16105_at LTK Leukocyte tyrosine kinase [48] D86988_at KIAA0221 gene [49] M91463_rna1_at Glucose transporter (GLUT4) gene [50] U38276_at Semaphorin III family homolog mRNA [51] X05610_at "COL4A2 Collagen, type IV, alpha 2" [52] Z74615_at "COL1A1 Collagen, type I, alpha 1" [53] D10537_s_at MPZ Myelin protein zero (Charcot-Marie-Tooth neuropathy 1B) [54] D13705_s_at Fatty acids omega-hydroxylase (cytochrome P-450HKV) [55] M25079_s_at GB DEF = Sickle cell beta-globin mRNA [56] HG1428-HT1428_s_at "Globin, Beta" [57] HG2705-HT2801_s_at Serine/Threonine Kinase (Gb:Z25427) [58] HG2809-HT2920_s_at Lung Surfactant Protein D [59] M74509_s_at GB DEF = Endogenous retrovirus type C oncovirus sequence [60] HG4318-HT4588_s_at Lim-Domain Transcription Factor Lim-1 [61] HG4535-HT4940_s_at Dematin [62] S76942_s_at "GB DEF = Dopamine D4 receptor {exon 1} [human, brain tumor tissue, mRNA Partial Mutant, 386 nt]" [63] L32831_s_at PROBABLE G PROTEIN-COUPLED RECEPTOR GPR3 [64] Y00414_s_at TH Tyrosine hydroxylase [65] M29277_at CELL SURFACE GLYCOPROTEIN MUC18 PRECURSOR [66] M33684_s_at "GB DEF = (clone lambda-16-1) non-receptor tyrosine phosphatase 1 (PTPN1) gene, exon x+4 and 5' end cds" [67] U05681_s_at Proto-oncogene BCL3 gene [68] X51435_s_at HIVEP1 Human immunodeficiency virus type I enhancer-binding protein 1 [69] M74715_s_at "IDUA Iduronidase, alpha-L-" [70] S56151_s_at HMFG [71] X58199_s_at GB DEF = Beta adducin [72] S83362_s_at "GB DEF = Differentiation-stimulating factor/leukemia inhibitory factor receptor {5' region, exon 1} [human, placenta, Genomic, 1350 nt]" [73] U67092_s_at "GB DEF = Ataxia-telangiectasia locus protein (ATM) gene, exons 1a, 1b, 2, 3 and 4, partial cds" [74] X89101_s_at "GB DEF = Fas (Apo-1, CD95)" [75] D83174_s_at CBP1 Collagen-binding protein 1 [76] U34301_r_at "GB DEF = Nonmuscle myosin heavy chain IIB gene, promoter region and exon 1" [77] K03431_cds1_at HPR gene (haptoglobin-related protein) extracted from Human haptoglobin gene (alpha-2 allele) [78] X72475_at GLUL Glutamate-ammonia ligase (glutamine synthase) [79] Z30644_at GB DEF = Chloride channel (putative) 2163bp [80] HG3527-HT3721_f_at "Luteinizing Hormone, Beta Subunit" ------------------------------------------------------------ clusterID = 5 # of genes = 48 -------------------------- [1] AC002115_rna2_at "F25451_2 gene extracted from Human DNA from overlapping chromosome 19 cosmids R31396, F25451, and R31076 containing COX6B and UPKA, genomic sequence" [2] AJ001421_at GB DEF = Rer1 protein [3] D13370_at DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE [4] D14689_at NUCLEAR PORE COMPLEX PROTEIN NUP214 [5] D25217_at "KIAA0027 gene, partial cds" [6] D25218_at "KIAA0112 gene, partial cds" [7] D50914_at "KIAA0124 gene, partial cds" [8] D83703_at Peroxisome assembly factor-2 [9] D87292_at Rhodanese [10] D87453_at "KIAA0264 gene, partial cds" [11] HG3039-HT3200_at Adp-Ribosylation-Like Factor [12] L07548_at ACY1 Aminoacylase 1 [13] L17131_rna1_at High mobility group protein (HMG-I(Y)) gene exons 1-8 [14] L33842_rna1_at "(clone FFE-7) type II inosine monophosphate dehydrogenase (IMPDH2) gene, exons 1-13" [15] M21186_at "CYBA Cytochrome b-245, alpha polypeptide" [16] M22638_at LYL-1 protein gene [17] M83751_at Arginine-rich protein (ARP) gene [18] S75463_at "ELONGATION FACTOR TU, MITOCHONDRIAL PRECURSOR" [19] U07424_at Putative tRNA synthetase-like protein mRNA [20] U08815_at Splicesomal protein (SAP 61) mRNA [21] U10362_at GP36b glycoprotein mRNA [22] U16660_at Peroxisomal enoyl-CoA hydratase-like protein (HPXEL) mRNA [23] U30825_at Splicing factor SRp30c mRNA [24] U33818_at Inducible poly(A)-binding protein mRNA [25] U37022_rna1_at Cyclin-dependent kinase 4 (CDK4) gene [26] U38846_at Stimulator of TAR RNA binding (SRB) mRNA [27] U46025_at Chromosome 16p11.2 BAC Clone CIT987SK-234F9 complete sequence [28] U47105_at H105e3 mRNA [29] U63825_at Hepatitis delta antigen interacting protein A (dipA) mRNA [30] U72515_at C3f mRNA [31] U73167_cds5_at "SM15 gene (human interferon-related protein SM15 (U09585); final exon similar to partial sequence of human EST R48415, but would require alternative splice) extracted from Human cosmid LUCA14" [32] U87964_at Putative G-protein (GP-1) mRNA [33] X55733_at EUKARYOTIC INITIATION FACTOR 4B [34] X69908_rna1_at P2 gene for c subunit of mitochondrial ATP synthase gene extracted from H.sapiens gene for mitochondrial ATP synthase c subunit (P2 form) [35] X75593_at Rab 13 [36] X76013_at GLUTAMINYL-TRNA SYNTHETASE [37] X90872_at Gp25L2 protein [38] X94910_at ERp31 protein [39] Y00281_at RPN1 Ribophorin I [40] Y09022_at Not56-like protein [41] HG110-HT110_s_at Heterogeneous Nuclear Ribonucleoprotein A/B [42] U24183_s_at "PFKM Phosphofructokinase, muscle" [43] L05624_s_at DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 [44] M34338_s_at SRM Spermidine synthase [45] M58525_s_at COMT Catechol-O-methyltransferase [46] M61832_s_at AHCY S-adenosylhomocysteine hydrolase [47] Z50115_s_at Thimet oligopeptidase (metalloproteinase) [48] U69126_s_at "FUSE binding protein 2 (FBP2) mRNA, partial cds" ------------------------------------------------------------ clusterID = 6 # of genes = 41 -------------------------- [1] AF000560_at "TTF-I interacting peptide 20 mRNA, partial cds" [2] D28588_at SP2 Sp2 transcription factor [3] D63481_at "KIAA0147 gene, partial cds" [4] D63879_at KIAA0156 gene [5] D80007_at "KIAA0185 gene, partial cds" [6] D83778_at "KIAA0194 gene, partial cds" [7] D84110_at RBP-MS/type 1 [8] D87075_at "KIAA0238 gene, partial cds" [9] HG3286-HT3463_at "Crystallin, Alpha A" [10] HG3495-HT3689_at "Collagen, Type Ix, Alpha 1" [11] K01383_at "GB DEF = Metallothionein-I-A gene, complete coding sequence" [12] L19161_at GB DEF = Translation initiation factor eIF-2 gamma subunit mRNA [13] L24783_at GB DEF = mRNA fragment [14] L36463_at "Ras inhibitor mRNA, 3' end" [15] L77213_at Phosphomevalonate kinase mRNA [16] M68520_at CDK2 Cyclin-dependent kinase 2 [17] M90656_at "GLCLC Glutamate-cysteine ligase (gamma-glutamylcysteine synthetase), catalytic (72.8kD)" [18] U01212_at GB DEF = Olfactory marker protein (OMP) gene [19] U03057_at Actin bundling protein mRNA [20] U08336_at Basic helix-loop-helix transcription factor mRNA [21] U34605_at Retinoic acid- and interferon-inducible 58K protein RI58 mRNA [22] U43286_at Selenophosphate synthetase 2 (SPS2) mRNA [23] U58970_at Putative outer mitochondrial membrane 34 kDa translocase hTOM34 mRNA [24] U70671_at "Ataxin-2 related protein mRNA, partial cds" [25] U84569_at YF5 mRNA [26] U96094_at Sarcolipin (SLN) mRNA [27] X07290_at ZINC FINGER PROTEIN HF.12 [28] X58255_at Flg-2 gene for fibroblast growth factor receptor [29] X65873_at KINESIN HEAVY CHAIN [30] X67683_at GB DEF = Keratin 4 [31] X96924_rna1_at Gene encoding mitochondrial citrate transport protein [32] X98085_at "TNR Tenascin R (restrictin, janusin)" [33] M38258_at "RARG Retinoic acid receptor, gamma 1" [34] HG4668-HT5083_s_at "Transcription Factor Mef2, Alt. Splice 2" [35] L23333_s_at GB DEF = Corticotropin releasing factor receptor mRNA [36] X90824_s_at "USF2a & USF2b, clone P2" [37] S52969_cds1_s_at "Description: alpha-1,3 fucosyltransferase gene extracted from alpha-(1.3/1,4) fucosyltransferase/FucT-III, alpha-1,3 fucosyltransferase/FucT-VI [human, Genomic, 1045 nt 4 segments]" [38] S80437_s_at "Fatty acid synthase {3' region} [human, breast and HepG2 cells, mRNA Partial, 2237 nt]" [39] S82597_rna1_s_at "Description: UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase gene extracted from UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase/GalNAc-transferase {3' region, exon 11} [human, placenta, Genomic, 1902 nt]" [40] L42583_f_at "KERATIN, TYPE II CYTOSKELETAL 6D" [41] L42601_f_at "KERATIN, TYPE II CYTOSKELETAL 6D" ------------------------------------------------------------ clusterID = 7 # of genes = 15 -------------------------- [1] D29642_at HYPOTHETICAL MYELOID CELL LINE PROTEIN 3 [2] D43947_at KIAA0100 gene [3] D78335_at 5'-terminal region of UMK [4] J02645_at EIF2A Eukaryotic translation initiation factor 2A [5] L05425_at Autoantigen mRNA [6] L32866_at "Effector cell protease receptor-1 (EPR-1) gene, partial cds" [7] M14539_at COAGULATION FACTOR XIII A CHAIN [8] M29696_at IL7R Interleukin 7 receptor [9] M95929_at "Homeobox protein (PHOX1) mRNA, 3' end" [10] S66431_at RBP2 [11] U85707_at Leukemogenic homolog protein (MEIS1) mRNA [12] X68194_at "Pantophysin [human, keratinocyte line HaCaT, mRNA, 2106 nt]" [13] X86691_at 218kD Mi-2 protein [14] D43968_at CBFA2 Proto-oncogene AML1 {alternative products} [15] M61827_rna1_s_at Leukosialin (CD43) gene ------------------------------------------------------------ clusterID = 8 # of genes = 22 -------------------------- [1] HG1872-HT1907_at "Major Histocompatibility Complex, Dg" [2] U15085_at "HLA-DMB Major histocompatibility complex, class II, DM beta" [3] X00274_at "HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN PRECURSOR" [4] X03100_cds2_at HLA-SB alpha gene (class II antigen) extracted from Human HLA-SB(DP) alpha gene [5] X62744_at "CLASS II HISTOCOMPATIBILITY ANTIGEN, M ALPHA CHAIN PRECURSOR" [6] M16276_at "HLA-DQB1 Major histocompatibility complex, class II, DQ beta 1" [7] X56841_at HLA-E MHC class I antigen HLA-E [8] M34996_s_at "MHC cell surface glycoprotein (HLA-DQA) mRNA, 3'end" [9] M13560_s_at PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR [10] M57466_s_at MHC class II HLA-DP light chain mRNA [11] X74301_s_at MHC CLASS II TRANSACTIVATOR CIITA [12] HG3576-HT3779_f_at "Major Histocompatibility Complex, Class Ii Beta W52" [13] HG3597-HT3800_f_at "Major Histocompatibility Complex, Class I (Gb:X12432)" [14] HG688-HT688_f_at "Major Histocompatibility Complex, Class Ii, Dr Beta 2 (Gb:X65561)" [15] D32129_f_at "HLA-A MHC class I protein HLA-A (HLA-A28,-B40, -Cw3)" [16] HG2915-HT3059_f_at "Major Histocompatibility Complex, Class I, E (Gb:M20022)" [17] HG2917-HT3061_f_at "Major Histocompatibility Complex, Class I, E (Gb:M21533)" [18] K02405_f_at "HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(1) BETA CHAIN PRECURSOR" [19] M33600_f_at "HLA-DRB1 Major histocompatibility complex, class II, DR beta 5" [20] HG658-HT658_f_at "Major Histocompatibility Complex, Class I, C (Gb:X58536)" [21] M94880_f_at "HLA-A MHC class I protein HLA-A (HLA-A28,-B40, -Cw3)" [22] X03068_f_at "HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(W1.1) BETA CHAIN PRECURSOR" ------------------------------------------------------------ clusterID = 9 # of genes = 70 -------------------------- [1] AB000449_at VRK1 [2] AB003698_at Cdc7-related kinase [3] D14043_at PUTATIVE MUCIN CORE PROTEIN PRECURSOR 24 [4] D26069_at "KIAA0041 gene, partial cds" [5] D38550_at "KIAA0075 gene, partial cds" [6] D43948_at KIAA0097 gene [7] D44466_at Proteasome subunit p112 [8] D50663_at CW-1 mRNA [9] D50692_at C-myc binding protein [10] D61391_at Phosphoribosypyrophosphate synthetase-associated protein 39 [11] D78275_at Proteasome subunit p42 [12] D79992_at KIAA0170 gene [13] D80001_at "KIAA0179 gene, partial cds" [14] D80008_at KIAA0186 gene [15] D80012_at "KIAA0190 gene, partial cds" [16] D85758_at Enhancer of rudimentary homolog mRNA [17] D86971_at "KIAA0217 gene, partial cds" [18] D86978_at "KIAA0225 gene, partial cds" [19] D86985_at KIAA0232 gene [20] D87448_at "KIAA0259 gene, partial cds" [21] D87466_at "KIAA0276 gene, partial cds" [22] D87969_at CMP-sialic acid transporter [23] HG4126-HT4396_at Zinc Finger Protein Hzf4 [24] J03589_at UBIQUITIN-LIKE PROTEIN GDX [25] J04088_at TOP2A Topoisomerase (DNA) II alpha (170kD) [26] L25270_at XE169 PROTEIN [27] L34657_at PECAM1 Platelet/endothelial cell adhesion molecule (CD31 antigen) [28] L36720_at Bystin mRNA [29] L40391_at (clone s153) mRNA fragment [30] L40410_at "Thyroid receptor interactor (TRIP3) mRNA, 3' end of cds" [31] M22898_at TP53 Tumor protein p53 (Li-Fraumeni syndrome) [32] M22976_at CYB5 Cytochrome b-5 [33] M30938_at "ATP-DEPENDENT DNA HELICASE II, 86 KD SUBUNIT" [34] M60527_at DCK Deoxycytidine kinase [35] M74524_at UBE2A Ubiquitin-conjugating enzyme E2A (RAD6 homolog) [36] M86752_at TRANSFORMATION-SENSITIVE PROTEIN IEF SSP 3521 [37] M92439_at 130 KD LEUCINE-RICH PROTEIN [38] U06631_at IEF SSP 9502 mRNA [39] U09564_at Serine kinase mRNA [40] U14575_at (ard-1) mRNA [41] U15128_at "Beta-1,2-N-acetylglucosaminyltransferase II (MGAT2) gene" [42] U22897_at Nuclear domain 10 protein (ndp52) mRNA [43] U31383_at G protein gamma-10 subunit mRNA [44] U31814_at Transcriptional regulator homolog RPD3 mRNA [45] U33286_at Chromosome segregation gene homolog CAS mRNA [46] U35113_at Metastasis-associated mta1 mRNA [47] U51920_at SRP54 Signal recognition particle 54 kD protein [48] U72342_at PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE 45 KD SUBUNIT [49] U77456_at Nucleosome assembly protein 2 mRNA [50] U79297_at Clone 23589 mRNA sequence [51] U95006_at D9 splice variant A mRNA [52] X06745_at DNA polymerase alpha-subunit [53] X63563_at RPS13 RNA polymerase II polypeptide B (140 kD) [54] X74262_at RETINOBLASTOMA BINDING PROTEIN P48 [55] X78627_at Translin [56] X89398_cds2_at "Ung gene (uracil-DNA-glycosylase, UNG2) extracted from H.sapiens ung gene for uracil DNA-glycosylase" [57] D80000_at "KIAA0178 gene, partial cds" [58] L35263_at CSaids binding protein (CSBP1) mRNA [59] U37426_at Kinesin-like spindle protein HKSP (HKSP) mRNA [60] U47077_at DNA-dependent protein kinase catalytic subunit (DNA-PKcs) mRNA [61] X59739_at "ZFX Zinc finger protein, X-linked" [62] HG1400-HT1400_s_at "Carboxyl Methyltransferase, Aspartate, Alt. Splice 1" [63] M19311_s_at "CALM1 Calmodulin 1 (phosphorylase kinase, delta)" [64] S78271_s_at SB1.8/DXS423E [65] Z74792_s_at CCAAT transcription binding factor subunit gamma [66] J03805_s_at "Phosphatase 2A mRNA, partial cds" [67] L25931_s_at LBR Lamin B receptor [68] L47276_s_at "GB DEF = (cell line HL-60) alpha topoisomerase truncated-form mRNA, 3'UTR" [69] U35835_s_at "DNA-PK mRNA, partial cds" [70] U72936_s_at X-LINKED HELICASE II ------------------------------------------------------------ clusterID = 10 # of genes = 22 -------------------------- [1] D15050_at Transcription factor AREB6 [2] L08246_at INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL1 [3] L11329_at DUAL SPECIFICITY PROTEIN PHOSPHATASE PAC-1 [4] L13391_at REGULATOR OF G-PROTEIN SIGNALLING 2 [5] L19871_at ATF3 Activating transcription factor 3 [6] L49169_at G0S3 mRNA [7] M20681_at "GLUCOSE TRANSPORTER TYPE 3, BRAIN" [8] U35048_at TSC-22 protein mRNA [9] X16706_at FOS-RELATED ANTIGEN 2 [10] X17094_at "PACE Paired basic amino acid cleaving enzyme (furin, membrane associated receptor protein)" [11] X52541_at EGR1 Early growth response protein 1 [12] U04636_rna1_at Cyclooxygenase-2 (hCox-2) gene [13] X65463_at RETINOIC ACID RECEPTOR RXR-BETA [14] HG1686-HT4572_s_at "Transcription Factor E4tf1, Respiratory, Gamma 2 Subunit, Alt. Splice 4" [15] L15326_s_at PTGS2 Prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) [16] D28235_s_at Cyclooxygenase-2 (hCox-2) gene [17] HG1496-HT1496_s_at Adrenal-Specific Protein Pg2 [18] U20734_s_at JUNB Jun B proto-oncogene [19] M92843_s_at ZFP36 Zinc finger protein homologous to Zfp-36 in mouse [20] S77154_s_at TINUR [21] L13740_at HMR Hormone receptor (growth factor-inducible nuclear protein N10) [22] X51345_at JUNB Jun B proto-oncogene ------------------------------------------------------------ clusterID = 11 # of genes = 17 -------------------------- [1] HG3934-HT4204_at G1 Phase-Specific Gene [2] U38480_at Retinoid X receptor-gamma mRNA [3] U55258_at GB DEF = HBRAVO/Nr-CAM precursor (hBRAVO/Nr-CAM) gene [4] U79255_at "X11 protein mRNA, partial cds" [5] U87972_at "GB DEF = NAD+-isocitrate dehydrogenase mRNA, partial cds" [6] X80026_at B-cam mRNA [7] Y00970_at ACR Acrosin [8] Y10207_at GB DEF = CD171 protein [9] Z19574_rna1_at Cytokeratin 17 [10] X82209_at MN1 mRNA [11] D86331_s_at MMP2 Matrix metalloproteinase 2 [12] M33493_s_at "Tryptase-III mRNA, 3' end" [13] X13810_s_at "POU2F2 POU domain, class 2, transcription factor 2" [14] M84820_s_at RETINOIC ACID RECEPTOR RXR-BETA [15] U68162_cds1_s_at MPL gene (thrombopoietin receptor) extracted from Human thrombopoietin receptor (MPL) gene [16] S72043_rna1_at "GIF=growth inhibitory factor [human, brain, Genomic, 2015 nt]" [17] X55989_rna1_at ECRP gene for eosinophil cationic related protein ------------------------------------------------------------ clusterID = 12 # of genes = 48 -------------------------- [1] D00017_at ANX2 Annexin II (lipocortin II) [2] D50402_at NRAMP1 Natural resistance-associated macrophage protein 1 (might include Leishmaniasis) [3] D88422_at CYSTATIN A [4] HG2788-HT2896_at Calcyclin [5] HG3494-HT3688_at Nuclear Factor Nf-Il6 [6] J03909_at GAMMA-INTERFERON-INDUCIBLE PROTEIN IP-30 PRECURSOR [7] J04456_at LGALS1 Ubiquinol-cytochrome c reductase core protein II [8] K01396_at "PI Protease inhibitor 1 (anti-elastase), alpha-1-antitrypsin" [9] L09708_at C2 Complement component C2 [10] L21954_at PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR [11] M14949_at RAS-RELATED PROTEIN R-RAS [12] M27891_at CST3 Cystatin C (amyloid angiopathy and cerebral hemorrhage) [13] M33195_at Fc-epsilon-receptor gamma-chain mRNA [14] M38591_at "S100A10 S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))" [15] M57710_at "LGALS3 Lectin, galactoside-binding, soluble, 3 (galectin 3) (NOTE: redefinition of symbol)" [16] M62505_at C5R1 Complement component 5 receptor 1 (C5a ligand) [17] M62840_at AOAH Acyloxyacyl hydrolase (neutrophil) [18] M63138_at CTSD Cathepsin D (lysosomal aspartyl protease) [19] M63835_at "HIGH AFFINITY IMMUNOGLOBULIN GAMMA FC RECEPTOR I ""A FORM"" PRECURSOR" [20] M80563_at PLACENTAL CALCIUM-BINDING PROTEIN [21] M80647_at THROMBOXANE-A SYNTHASE [22] M87860_at GALECTIN-2 [23] U00921_at "LST1 mRNA, cLST1/E splice variant" [24] U09578_at MAPKAP kinase (3pK) mRNA [25] U09770_at Cysteine-rich heart protein (hCRHP) mRNA [26] U16306_at CSPG2 Chondroitin sulfate proteoglycan 2 (versican) [27] U21931_at FBP1 Fructose-bisphosphatase 1 [28] U25956_at SELPLG Selectin P ligand [29] U70063_at Acid ceramidase mRNA [30] U77643_at K12 protein precursor mRNA [31] X07767_at "PRKACA Protein kinase, cAMP-dependent, catalytic, alpha" [32] X16832_at CTSH Cathepsin H [33] X61587_at "ARHG Ras homolog gene family, member G (rho G)" [34] X62320_at GRN Granulin [35] X67698_at Tissue specific mRNA [36] X79882_at Lrp mRNA [37] X81479_at "EMR1 Egf-like module containing, mucin-like, hormone receptor-like sequence 1" [38] S82447_s_at GCN5-like 1 [39] U05572_s_at MANB Mannosidase alpha-B (lysosomal) [40] HG417-HT417_s_at Cathepsin B [41] J03077_s_at PSAP Sulfated glycoprotein 1 [42] M16591_s_at HCK Hemopoietic cell kinase [43] M98399_s_at "CD36 CD36 antigen (collagen type I receptor, thrombospondin receptor)" [44] AF000424_s_at "LST1 mRNA, cLST1/E splice variant" [45] J03801_f_at LYZ Lysozyme [46] M19045_f_at LYZ Lysozyme [47] X14008_rna1_f_at Lysozyme gene (EC 3.2.1.17) [48] M15395_at SELL Leukocyte adhesion protein beta subunit ------------------------------------------------------------ clusterID = 13 # of genes = 22 -------------------------- [1] D10522_at MACS Myristoylated alanine-rich C-kinase substrate [2] D10923_at PROBABLE G PROTEIN-COUPLED RECEPTOR HM74 [3] D49817_at "Fructose 6-phosphate,2-kinase/fructose 2,6-bisphosphatase" [4] M14660_at "GB DEF = ISG-54K gene (interferon stimulated gene) encoding a 54 kDA protein, exon 2" [5] M31166_at "PTX3 Pentaxin-related gene, rapidly induced by IL-1 beta" [6] S81914_at IEX-1 [7] U02020_at Pre-B cell enhancing factor (PBEF) mRNA [8] X04500_at "IL1B Interleukin 1, beta" [9] X07834_at "SOD2 Superoxide dismutase 2, mitochondrial" [10] X14787_at THBS1 Thrombospondin 1 [11] D10040_at FACL1 Long chain fatty acid acyl-coA ligase [12] M24283_at "ICAM1 Intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" [13] M23178_s_at MACROPHAGE INFLAMMATORY PROTEIN 1-ALPHA PRECURSOR [14] L09229_s_at FACL1 Long chain fatty acid acyl-coA ligase [15] M69203_s_at SCYA4 Small inducible cytokine A4 (homologous to mouse Mip-1b) [16] J04130_s_at SCYA4 Small inducible cytokine A4 (homologous to mouse Mip-1b) [17] X04602_s_at IL6 Interleukin 6 (B cell stimulatory factor 2) [18] Y00081_s_at IL6 Interleukin 6 (B cell stimulatory factor 2) [19] X97748_s_at GB DEF = PTX3 gene promotor region [20] M72885_rna1_s_at "G0S2 gene extracted from Human GOS2 gene, 5' flank and cds" [21] X65965_s_at GB DEF = SOD-2 gene for manganese superoxide dismutase [22] Z46632_r_at "PDE4C Phosphodiesterase 4C, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E1)" ------------------------------------------------------------ clusterID = 14 # of genes = 47 -------------------------- [1] D13435_at "PIGF Phosphatidylinositol glycan, class F" [2] D31891_at KIAA0067 gene [3] D32050_at AARS Alanyl-tRNA synthetase [4] D63486_at KIAA0152 gene [5] D79999_at "KIAA0177 gene, partial cds" [6] D83597_at RP105 [7] D87459_at KIAA0269 gene [8] D90086_at PDHB Pyruvate dehydrogenase (lipoamide) beta [9] HG2825-HT2949_at Ret Transforming Gene [10] K02574_at NP Nucleoside phosphorylase [11] L37936_at MITOCHONDRIAL ELONGATION FACTOR TS PRECURSOR [12] L38616_at Brain and reproductive organ-expressed protein (BRE) gene [13] M33308_at VCL Vinculin [14] M37033_at CD53 CD53 antigen [15] M64098_at High density lipoprotein binding protein (HBP) mRNA [16] M88458_at ELP-1 mRNA sequence [17] U07418_at MLH1 DNA mismatch repair protein MLH1 [18] U32849_at Hou mRNA [19] U40282_at Integrin-linked kinase (ILK) mRNA [20] U56637_at Capping protein alpha subunit isoform 1 mRNA [21] U57650_at Signaling inositol polyphosphate 5 phosphatase SIP-110 mRNA [22] U78027_rna4_at "L44L gene (L44-like ribosomal protein) extracted from Human Bruton's tyrosine kinase (BTK), alpha-D-galactosidase A (GLA), L44-like ribosomal protein (L44L) and FTP3 (FTP3) genes" [23] U88047_at "DNA binding protein homolog (DRIL) mRNA, partial cds" [24] U90651_at "Embryonic ectoderm development protein homolog (eed) mRNA, partial cds" [25] U91930_at AP-3 complex delta subunit mRNA [26] U94831_at Multispanning membrane protein mRNA [27] X56253_rna1_at MPR46 gene for 46kd mannose 6-phosphate receptor [28] X61970_at PROTEASOME ZETA CHAIN [29] X63469_at "GTF2E2 General transcription factor TFIIE beta subunit, 34 kD" [30] X64330_at ATP-citrate lyase [31] X76228_at "ATP6E ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD" [32] X76538_at "MPV17 MpV17 transgene, murine homolog, glomerulosclerosis" [33] X81003_at HCG V mRNA [34] X81198_at COATOMER DELTA SUBUNIT [35] X82554_rna1_at SPHAR gene for cyclin-related protein [36] X86018_at MUF1 protein [37] X91809_at GAIP protein [38] X95586_at "PSMB5 Proteasome (prosome, macropain) subunit, beta type, 5" [39] Y00062_at "PTPRC Protein tyrosine phosphatase, receptor type, c polypeptide" [40] Z17227_at "CRFB4 Cytokine receptor family II, member 4" [41] Z48042_at mRNA encoding GPI-anchored protein p137 [42] D16481_at Mitochondrial 3-ketoacyl-CoA thiolase beta-subunit of trifunctional protein [43] L33075_at Ras GTPase-activating-like protein (IQGAP1) mRNA [44] L76517_at (clone cc44) senilin 1 (PS1; S182) mRNA [45] M96995_s_at GRB2 Growth factor receptor-bound protein 2 [46] M37238_s_at "PLCG2 Phospholipase C, gamma 2 (phosphatidylinositol-specific)" [47] HG3546-HT3744_s_at "Pre-Mrna Splicing Factor Sf2p33, Alt. Splice Form 1" ------------------------------------------------------------ clusterID = 15 # of genes = 43 -------------------------- [1] D14827_at GB DEF = Tax helper protein 1 [2] D16593_at HPCA Hippocalcin [3] D78014_at Dihydropyrimidinase related protein-3 [4] D82061_at "B-cell mRNA for a member of the short-chain alcohol dehydrogenase family, partial cds" [5] HG180-HT180_at Ahnak-A Nucleoprotein Ahnak-A [6] HG2442-HT2538_at "Tropomyosin, Alpha, Muscle, Alt. Splice 2, Skeletal Muscle (Fibroblast)" [7] HG2480-HT2576_at Fmlp-Related Receptor I [8] HG4234-HT4504_at Methylenetetrahydrofolate Reductase [9] HG4749-HT5197_at "Calmitine Calcium-Binding Protein, Mitochondrial" [10] L13436_at "Guanylate cyclase mRNA, complete mature peptide" [11] L16464_at ETS-RELATED PROTEIN PE-1 [12] L19711_at Dystroglycan (DAG1) mRNA [13] L25081_at ARH9 Aplysia ras-related homolog 9 [14] M27826_at Endogenous retroviral protease mRNA [15] M59911_at ITGA3 Integrin alpha-3 subunit [16] M65254_at "PPP2R1B Protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform" [17] M92449_at "LTR mRNA, 3' end of coding region and 3' flank" [18] M99063_at "KERATIN, TYPE II CYTOSKELETAL 2 ORAL" [19] S73813_at CD39 CD39 antigen [20] U09850_at ZNF143 Zinc finger protein 143 (clone pHZ-1) [21] U29953_rna1_at Pigment epithelium-derived factor gene [22] U41344_at PRELP Proline arginine-rich end leucine-rich repeat protein [23] U50315_at EZH1 Enhancer of zeste (Drosophila) homolog 1 [24] U79251_at OPCML Opioid-binding cell adhesion molecule [25] X54232_at GPC1 Glypican 1 [26] X59434_at TST Thiosulfate sulfurtransferase (rhodanese) [27] X60957_at TIE Tyrosine kinase with immunoglobulin and epidermal growth factor homology domains [28] X67594_at MC1R Melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) [29] X77909_at IKBL mRNA [30] M64231_rna1_at Spermidine synthase gene [31] AJ000099_s_at GB DEF = Lysosomal hyaluronidase [32] HG2994-HT4850_s_at "Elastin, Alt. Splice 2" [33] L10333_s_at Neuroendocrine-specific protein A (NSP) mRNA [34] S72493_s_at "KERATIN, TYPE I CYTOSKELETAL 17" [35] M32879_s_at CYP11B1 Cytochrome P450 11 beta [36] X59303_s_at VALYL-TRNA SYNTHETASE [37] M21305_at GB DEF = Alpha satellite and satellite 3 junction DNA sequence [38] HG3236-HT3413_f_at Neurofibromatosis 2 Tumor Suppressor (Gb:L27065) [39] M23263_at AR Androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) [40] U12140_at Tyrosine kinase receptor p145TRK-B (TRK-B) mRNA [41] L00389_f_at Cytochrome P-450 4 gene [42] M31667_f_at CYTOCHROME P450 IA2 [43] U88902_cds1_f_at "Integrase gene extracted from Human endogenous retrovirus H clone g10.34 integrase and putative envelope protein genes, partial cds" ------------------------------------------------------------ clusterID = 16 # of genes = 59 -------------------------- [1] AB002315_at KIAA0317 gene [2] AJ000480_at GB DEF = C8FW phosphoprotein [3] D14811_at KIAA0110 gene [4] D50310_at CANX Calnexin [5] D87451_at KIAA0262 gene [6] HG1102-HT1102_at Ras-Related C3 Botulinum Toxin Substrate [7] HG1879-HT1919_at Ras-Like Protein Tc10 [8] HG3521-HT3715_at Ras-Related Protein Rap1b [9] HG909-HT909_at Mg81 [10] J02923_at LCP1 Lymphocyte cytosolic protein 1 (L-plastin) [11] J04543_at ANX7 Annexin VII (synexin) [12] L08666_at VDAC2 Voltage-dependent anion channel 2 [13] L24804_at (p23) mRNA [14] L29277_at STAT3 Signal transducer and activator of transcription 3 (acute-phase response factor) [15] L37042_at "CSNK1A1 Casein kinase 1, alpha 1" [16] L40586_at IDS Iduronate 2-sulfatase (Hunter syndrome) [17] M21551_rna1_at Neuromedin B mRNA [18] M21904_at "MDU1 Antigen identified by monoclonal antibodies 4F2, TRA1.10, TROP4, and T43" [19] M22538_at NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2 (24kD) [20] M28713_at NADH-CYTOCHROME B5 REDUCTASE [21] M55150_at FAH Fumarylacetoacetate [22] M68891_at GATA2 GATA-binding protein 2 [23] M84739_at CALR Autoantigen calreticulin [24] M95178_at "ALPHA-ACTININ 1, CYTOSKELETAL ISOFORM" [25] M95610_at "COL9A2 Collagen, type IX, alpha 2" [26] U14417_at "Ral guanine nucleotide dissociation stimulator mRNA, partial cds" [27] U33821_at Tax1-binding protein TXBP151 mRNA [28] U34880_at DPH2L [29] U49436_at EIF5 Eukaryotic translation initiation factor 5 (eIF5) [30] U50136_rna1_at Leukotriene C4 synthase (LTC4S) gene [31] U57342_at Myelodysplasia/myeloid leukemia factor 2 (MLF2) mRNA [32] U61234_at Tubulin-folding cofactor C mRNA [33] U67963_at Lysophospholipase homolog (HU-K5) mRNA [34] U78525_at Eukaryotic translation initiation factor (eIF3) mRNA [35] X14046_at CD37 CD37 antigen [36] X16665_at HOXB2 Homeo box B2 [37] X70070_at GB DEF = Neurotensin receptor [38] X74570_at Gal-beta(1-3/1-4)GlcNAc alpha-2.3-sialyltransferase [39] X75304_at Golgi antigen gcp372 [40] X79780_at YPT3 mRNA [41] X83378_at Putative chloride channel [42] X93499_at RAB7 protein [43] M31724_at PTPN1 Tyrosine phosphatase 1 [44] Z49835_s_at PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR [45] S78771_s_at RING3 PROTEIN [46] Z84497_s_at RING3 PROTEIN [47] HG2639-HT2735_s_at Single-Stranded Dna-Binding Protein Mssp-1 [48] J03263_s_at LAMP1 Lysosome-associated membrane protein 1 [49] U33838_s_at "GB DEF = NF-kappa-B p65delta3 mRNA, spliced transcript lacking exons 6 and 7, partial cds" [50] L43575_s_at (clone EST02946) mRNA [51] L43579_s_at "GB DEF = Clone 110298 map Xq28, mRNA sequence" [52] S72024_s_at EIF5A Eukaryotic translation initiation factor 5A [53] S81243_s_at Mitogen induced nuclear orphan receptor (MINOR) mRNA [54] Z54367_s_at GB DEF = Plectin [55] Z48501_s_at GB DEF = Polyadenylate binding protein II [56] U40279_at "GB DEF = Beta-2 integrin alphaD subunit (ITGAD) gene, exons 25-30, and partial cds" [57] U76388_at Steroidogenic factor 1 mRNA [58] D38498_f_at "PMS8 mRNA (yeast mismatch repair gene PMS1 homologue), partial cds (C-terminal region)" [59] K03189_f_at Chorionic gonadotropin (hcg) beta subunit mRNA ------------------------------------------------------------ clusterID = 17 # of genes = 62 -------------------------- [1] AC002115_cds1_at "COX6B gene (COXG) extracted from Human DNA from overlapping chromosome 19 cosmids R31396, F25451, and R31076 containing COX6B and UPKA, genomic sequence" [2] AF006084_at Arp2/3 protein complex subunit p41-Arc (ARC41) mRNA [3] D23662_at UBL1 Ubiquitin-like protein [4] D26598_at Proteasome subunit HsC10-II [5] D61380_at DJ-1 protein [6] D78361_at "Ornithine decarboxylase antizyme, ORF 1 and ORF 2" [7] D82348_at 5-aminoimidazole-4-carboxamide-1-beta-D-ribonucleoti de transformylase/inosinicase [8] HG1614-HT1614_at "Protein Phosphatase 1, Alpha Catalytic Subunit" [9] HG2279-HT2375_at Triosephosphate Isomerase [10] J03191_at Profilin mRNA [11] J04173_at PGAM1 Phosphoglycerate mutase 1 (brain) [12] J04469_at Mitochondrial creatine kinase (CKMT) gene [13] J04823_rna1_at Cytochrome c oxidase subunit VIII (COX8) mRNA [14] K03430_at "C1QB Complement component 1, q subcomponent, beta polypeptide" [15] K03460_at "Alpha-tubulin isotype H2-alpha gene, last exon" [16] L04490_at "(clone CC6) NADH-ubiquinone oxidoreductase subunit mRNA, 3' end cds" [17] L07765_at CES2 Carboxylestease 2 (liver) [18] L11285_at DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 [19] L16842_at UQCRC1 Ubiquinol-cytochrome c reductase core protein I [20] L19437_at TALDO Transaldolase [21] L19686_rna1_at Macrophage migration inhibitory factor (MIF) gene [22] M11186_at OXT Oxytocin [23] M13194_at "ERCC1 Excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)" [24] M19961_at COX5B Cytochrome c oxidase subunit Vb [25] M22632_at "GOT2 Glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" [26] M22960_at PPGB Protective protein for beta-galactosidase (galactosialidosis) [27] M57567_at ARF5 ADP-ribosylation factor 5 [28] M68864_at ORF mRNA [29] M94345_at "CAPG Capping protein (actin filament), gelsolin-like" [30] U13991_at TATA-binding protein associated factor 30 kDa subunit (tafII30) mRNA [31] U17886_at "SDH1 Succinate dehydrogenase, iron sulphur (Ip) subunit" [32] U22055_at 100 kDa coactivator mRNA [33] U37690_at RNA polymerase II subunit (hsRPB10) mRNA [34] U47927_at UBIQUITIN CARBOXYL-TERMINAL HYDROLASE T [35] U50523_at "BRCA2 region, mRNA sequence CG037" [36] U50733_at Dynamitin mRNA [37] U65579_at "Mitochondrial NADH dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa subunit precursor (NDUFS8) nuclear mRNA encoding mitochondrial protein" [38] U70660_at Copper transport protein HAH1 (HAH1) mRNA [39] U80040_at "ACO2 Aconitase 2, mitochondrial" [40] U90915_at COX4 Cytochrome c oxidase subunit IV [41] X02152_at LDHA Lactate dehydrogenase A [42] X15341_at CYTOCHROME C OXIDASE POLYPEPTIDE VIA-LIVER PRECURSOR [43] X52151_at ARSA Arylsulfatase A [44] X52773_at "RXRA Retinoid X receptor, alpha" [45] X56494_at "PKM2 Pyruvate kinase, muscle" [46] X62078_at GM2A GM2 ganglioside activator protein [47] X63422_at "ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [48] X71129_at "ETFB Electron-transfer-flavoprotein, beta polypeptide" [49] X71973_at GPX4 Phospholipid hydroperoxide glutathione peroxidase [50] X92814_at Rat HREV107-like protein [51] Z35093_at SURF1 Surfeit 1 [52] Z49254_at L23-related mRNA [53] Z50749_at Sds22-like mRNA [54] D38251_s_at DNA-DIRECTED RNA POLYMERASE II 23 KD POLYPEPTIDE [55] X89109_s_at MacMarcks mRNA [56] HG2815-HT2931_at "Myosin, Light Chain, Alkali, Smooth Muscle (Gb:U02629), Non-Muscle, Alt. Splice 2" [57] V00594_s_at Metallothionein isoform 2 [58] L03411_s_at RD Radin blood group [59] M14328_s_at "ENO1 Enolase 1, (alpha)" [60] M36429_s_at Transducin beta-2 subunit mRNA [61] M24485_s_at SAT Spermidine/spermine N1-acetyltransferase [62] U28014_at ICH-2 PROTEASE PRECURSOR ------------------------------------------------------------ clusterID = 18 # of genes = 27 -------------------------- [1] L01087_at PRKCQ Protein kinase C-theta [2] L05148_at Protein tyrosine kinase related mRNA sequence [3] L10373_at "MXS1 Membrane component, X chromosome, surface marker 1" [4] M12886_at "TCRB T-cell receptor, beta cluster" [5] M13792_at ADA Adenosine deaminase [6] M28826_at CD1B CD1b antigen (thymocyte antigen) [7] U14603_at Protein tyrosine phosphatase PTPCAAX2 (hPTPCAAX2) mRNA [8] U18009_at Chromosome 17q21 mRNA clone LF113 [9] U50743_at "Na,K-ATPase gamma subunit mRNA" [10] U64675_at SRI Sorcin [11] U67171_at GB DEF = Selenoprotein W (selW) mRNA [12] U93049_at GB DEF = SLP-76 associated protein mRNA [13] X03934_at GB DEF = T-cell antigen receptor gene T3-delta [14] X14975_at GB DEF = CD1 R2 gene for MHC-related antigen [15] X59871_at TCF7 Transcription factor 7 (T-cell specific) [16] X60992_at T-CELL DIFFERENTIATION ANTIGEN CD6 PRECURSOR [17] X62535_at "DAGK1 Diacylglycerol kinase, alpha (80kD)" [18] X66945_at FGFR1 Basic fibroblast growth factor (bFGF) receptor (shorter form) [19] X69398_at "CD47 CD47 antigen (Rh-related antigen, integrin-associated signal transducer)" [20] M26004_s_at CR2 Complement component (3d/Epstein Barr virus) receptor 2 [21] M16336_s_at "CD2 CD2 antigen (p50), sheep red blood cell receptor" [22] M26692_s_at "GB DEF = Lymphocyte-specific protein tyrosine kinase (LCK) gene, exon 1, and downstream promoter region" [23] M23323_s_at T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN PRECURSOR [24] U23852_s_at GB DEF = T-lymphocyte specific protein tyrosine kinase p56lck (lck) abberant mRNA [25] U49835_s_at CHIT1 Chitinase 1 [26] X00437_s_at "TCRB T-cell receptor, beta cluster" [27] X76223_s_at GB DEF = MAL gene exon 4 ------------------------------------------------------------ clusterID = 19 # of genes = 15 -------------------------- [1] D86979_at KIAA0226 gene [2] L02950_at CRYM Crystallin Mu [3] L14565_at PERIPHERIN [4] M33764_at ODC1 Ornithine decarboxylase 1 [5] M74719_at "SEF2-1A protein (SEF2-1A) mRNA, 5' end" [6] U40343_at CDK inhibitor p19INK4d mRNA [7] U52682_at IRF4 Interferon regulatory factor 4 [8] X51521_at VIL2 Villin 2 (ezrin) [9] X76717_at MT1L Metallothionein 1L [10] X98507_at Myosin-I beta [11] Z15108_at "PRKCZ Protein kinase C, zeta" [12] D29805_at GGTB2 Glycoprotein-4-beta-galactosyltransferase 2 [13] D63479_s_at DAGK4 Diacylglycerol kinase delta [14] HG2479-HT2575_s_at Helix-Loop-Helix Protein Sef2-1d [15] X79200_at "GB DEF = SYT-SSX, synovial sarcoma translocation junction" ------------------------------------------------------------ clusterID = 20 # of genes = 46 -------------------------- [1] AF000231_at RAS-RELATED PROTEIN RAB-11A [2] D00763_at GAPD Glyceraldehyde-3-phosphate dehydrogenase [3] D14658_at KIAA0102 gene [4] D79990_at KIAA0168 gene [5] D83032_at "Nuclear protein, NP220" [6] D84276_at CD38 CD38 antigen (p45) [7] D87078_at "KIAA0235 gene, partial cds" [8] D87446_at "KIAA0257 gene, partial cds" [9] J03473_at ADPRT ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [10] J05032_at ASPARTYL-TRNA SYNTHETASE [11] L07956_at "GBE1 Glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" [12] L13800_at "GB DEF = Liver expressed protein gene, 3' end" [13] L28010_at HnRNP F protein mRNA [14] L41887_rna1_at "Splicing factor, arginine/serine-rich 7 (SFRS7) gene" [15] L42542_at RLIP76 protein mRNA [16] L42572_at Motor protein [17] M33336_at PRKAR1A CAMP-dependent protein kinase regulatory subunit type I [18] M73547_at POLYPOSIS LOCUS PROTEIN 1 [19] M91432_at "ACADM Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain" [20] M98833_at FLI1 Friend leukemia virus integration 1 [21] U13695_at GB DEF = Homolog of yeast mutL (hPMS1) gene [22] U20998_at SRP9 Signal recognition particle 9 kD protein [23] U24266_at "Pyrroline-5-carboxylate dehydrogenase (P5CDh) mRNA, long form" [24] U30521_at FRAP FK506 binding protein 12-rapamycin associated protein [25] U32944_at Cytoplasmic dynein light chain 1 (hdlc1) mRNA [26] U48251_at "Protein kinase C-binding protein RACK7 mRNA, partial cds" [27] U50928_at PKD2 Autosomal dominant polycystic kidney disease type II [28] U79254_at Clone 23693 mRNA sequence [29] U79274_at Clone 23733 mRNA [30] U90551_at Histone 2A-like protein (H2A/l) mRNA [31] X15949_at IRF2 Interferon regulatory factor 2 [32] X68560_at SP3 Sp3 transcription factor [33] X70476_at COATOMER BETA' SUBUNIT [34] X76648_at GLRX Glutaredoxin (thioltransferase) [35] X82200_at Staf50 mRNA [36] X96752_at L-3-hydroxyacyl-CoA dehydrogenase [37] Y08614_at CRM1 protein [38] L10413_at "FNTA Farnesyltransferase, CAAX box, alpha" [39] U60061_at RPS26 Ribosomal protein S26 [40] Z15115_at TOP2B Topoisomerase (DNA) II beta (180kD) [41] U22376_cds2_s_at "C-myb gene extracted from Human (c-myb) gene, complete primary cds, and five complete alternatively spliced cds" [42] Z26491_s_at COMT Catechol-O-methyltransferase [43] U75276_s_at TFIIB related factor hBRF (HBRF) mRNA [44] U49020_cds2_s_at "MEF2A gene (myocyte-specific enhancer factor 2A, C9 form) extracted from Human myocyte-specific enhancer factor 2A (MEF2A) gene, first coding" [45] M31523_at TCF3 Transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) [46] X58399_at L2-9 transcript of unrearranged immunoglobulin V(H)5 pseudogene ------------------------------------------------------------ clusterID = 21 # of genes = 22 -------------------------- [1] HG2314-HT2410_at 4-Beta-Galactosyltransferase [2] HG3548-HT3749_at "Ccaat Displacement Protein, Cut Homolog, Alt. Splice 1" [3] J05257_at DPEP1 Dipeptidase 1 (renal) [4] L35240_at Enigma gene [5] M60459_at EPOR Erythropoietin receptor [6] M60748_at GB DEF = Histone H1 (H1F4) gene [7] M94250_at MDK Midkine (neurite growth-promoting factor 2) [8] U05259_rna1_at MB-1 gene [9] U12255_at IgG Fc receptor hFcRn mRNA [10] U29615_at Chitotriosidase precursor mRNA [11] U76272_at FHIT Fragile histidine triad gene product [12] V00563_at "GB DEF = Immunoglobulin mu, part of exon 8" [13] X03473_at HISTONE H1' [14] X87904_at RPS11 Ribosomal protein S11 [15] U00802_s_at Drebrin E [16] D26156_s_at Transcriptional activator hSNF2b [17] HG4683-HT5108_s_at Tumor Necrosis Factor Receptor 2 Associated Protein Trap3 [18] M13994_s_at BCL2 B-cell CLL/lymphoma 2 [19] Z80781_at H2B/j gene [20] X53683_at SCYA4 Small inducible cytokine A4 (homologous to mouse Mip-1b) [21] M60750_f_at GB DEF = Histone H2B.1 (H2B) gene [22] X00090_f_at GB DEF = Histone H3 gene ------------------------------------------------------------ clusterID = 22 # of genes = 8 -------------------------- [1] AFFX-HUMRGE/M10098_5_at AFFX-HUMRGE/M10098_5_at (endogenous control) [2] AFFX-HUMRGE/M10098_M_at AFFX-HUMRGE/M10098_M_at (endogenous control) [3] M28825_at CD1A CD1a antigen (thymocyte antigen) [4] U65676_at HPS Hermansky-Pudlak syndrome protein [5] U18422_at DP2 (Humdp2) mRNA [6] L40386_s_at DP2 (Humdp2) mRNA [7] U43203_s_at "TTF1 Transcription termination factor, RNA polymerase I" [8] X82850_s_at "TTF1 Transcription termination factor, RNA polymerase I" ------------------------------------------------------------ clusterID = 23 # of genes = 54 -------------------------- [1] AF002224_at "GB DEF = Angelman Syndrome Gene, E6-AP ubiquitin protein ligase 3A (UBE3A) mRNA from promoter P1, 5'UTR" [2] AF009368_at GB DEF = Luman mRNA [3] D29954_at HYPOTHETICAL MYELOID CELL LINE PROTEIN 6 [4] D30036_at PHOSPHATIDYLINOSITOL [5] D63160_at Serum lectin P35 [6] D82070_at AC1 mRNA [7] D84307_at Phosphoethanolamine cytidylyltransferase [8] J03133_at SP1 Sp1 transcription factor [9] J03764_at "PAI1 Plasminogen activator inhibitor, type I" [10] J04809_rna1_at Cytosolic adenylate kinase (AK1) gene [11] L34075_at FRAP FK506 binding protein 12-rapamycin associated protein [12] M25269_at "ELK1 ELK1, member of ETS oncogene family" [13] M31303_rna1_at Oncoprotein 18 (Op18) gene [14] M80629_at Cdc2-related protein kinase (CHED) mRNA [15] M83181_at GB DEF = Serotonin receptor gene [16] M93718_at NOS3 Nitric oxide synthase 3 (endothelial cell) [17] M94362_at "LAMB2 Laminin, beta 2 (laminin S)" [18] M96803_at "SPTBN1 Spectrin, beta, non-erythrocytic 1" [19] U04811_at Trophinin mRNA [20] U13395_at Oxidoreductase (HHCMA56) mRNA [21] U20582_at "Actin-like peptide mRNA, partial cds" [22] U32519_at GAP SH3 binding protein mRNA [23] U37012_at Cleavage and polyadenylation specificity factor mRNA [24] U37689_at RNA polymerase II subunit (hsRPB8) mRNA [25] U39905_at "SLC18A1 Solute carrier family 18 (vesicular monoamine), member 1" [26] U42412_at "5'-AMP-activated protein kinase, gamma-1 subunit mRNA" [27] U45975_at "Phosphatidylinositol (4,5)bisphosphate 5-phosphatase homolog mRNA, partial cds" [28] U52522_at "Arfaptin 2, putative target protein of ADP-ribosylation factor, mRNA" [29] U62437_at Neuronal nicotinic acetylcholine receptor beta-2 subunit [30] U66059_cds7_at "TCRBV1S1A1N1 gene extracted from Human germline T-cell receptor beta chain Dopamine-beta-hydroxylase-like, TRY1, TRY2, TRY3, TCRBV27S1P, TCRBV22S1A2N1T, TCRBV9S1A1T, TCRBV7S1A1N2T, TCRBV5S1A1T, TCRBV13S3, TCRBV6S7P, TCRBV7S3A2T, TCRBV13S2A1T, TCRBV9S2A2PT, TCRBV7S2A1N4T, TCRBV13S9/13S2A1T, TCRBV6S5A1N1, TCRBV30S1P, TCRBV31S1, TCRBV13S5, TCRBV6S1A1N1, TCRBV32S1P, TCRBV5S5P, TCRBV1S1A1N1, TCRBV12S2A1T, TCRBV21S1, TCRBV8S4P, TCRBV12S3, TCRBV21S3A2N2T, TCRBV8S5P, TCRBV13S1 genes from bases 1 to 267156 (section 1 of 3)" [31] U75362_at Isopeptidase T-3 (ISOT-3) mRNA [32] U79262_at DHPS Deoxyhypusine synthase [33] U94585_at Requiem homolog (hsReq) mRNA [34] X52943_at TRANSCRIPTION FACTOR ATF-A AND ATF-A-DELTA [35] X54938_at "ITPKA Inositol 1,4,5-trisphosphate 3-kinase A" [36] X57766_at PSG11 Pregnancy-specific beta-1 glycoprotein 11 [37] X66363_at SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 [38] X83973_at TTF-I [39] X85786_at BINDING REGULATORY FACTOR [40] X99688_at mRNA from TYL gene [41] Z69720_at MPG N-methylpurine-DNA glycosylase [42] M69181_at "GB DEF = Nonmuscle myosin heavy chain-B (MYH10) mRNA, partial cds" [43] U33841_at "ATM Ataxia telangiectasia mutated (includes complementation groups A, C and D)" [44] S50017_s_at "CNP 2',3'-cyclic nucleotide 3' phosphodiesterase" [45] J03260_s_at "GNAZ Guanine nucleotide binding protein (G protein), alpha z polypeptide" [46] HG243-HT243_s_at Lowe Oculocerebrorenal Syndrome Protein [47] HG4011-HT4804_s_at "Dystrophin-Associated Glycoprotein, 50 Kda, Alt. Splice 2" [48] S75213_s_at "PDE4A Phosphodiesterase 4A, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E2)" [49] S75578_s_at "GB DEF = 4-aminobutyrate aminotransferase [human, neuroblastoma BE cells, mRNA Partial, 1352 nt]" [50] L38490_s_at ARF4L ADP-ribosylation factor 4-like [51] X60003_s_at CAMP-RESPONSE ELEMENT BINDING PROTEIN [52] U18271_cds3_s_at Thymopoietin (TMPO) gene [53] M25296_at NPPB Natriuretic peptide precursor B [54] S80905_f_at "PRB2 locus salivary proline-rich protein mRNA, clone cP7" ------------------------------------------------------------ clusterID = 24 # of genes = 21 -------------------------- [1] D15057_at DEFENDER AGAINST CELL DEATH 1 [2] D50930_at KIAA0140 gene [3] D63813_at Rod photoreceptor protein [4] L38487_at "Estrogen receptor-related protein (hERRa1) mRNA, 3' end, partial cds" [5] L41067_at Transcription factor NFATx mRNA [6] U07563_cds1_at "ABL gene, exon 1b and intron 1b, and putative M8604 Met protein (M8604 Met) gene" [7] U23946_at Putative tumor suppressor (LUCA15) mRNA [8] U28811_at Cysteine-rich fibroblast growth factor receptor (CFR-1) mRNA [9] U37352_at "PPP2R4 Protein phosphatase 2A, regulatory subunit B' alpha-1" [10] U40462_at Ikaros/LyF-1 homolog (hIk-1) mRNA [11] U43522_at Protein tyrosine kinase PYK2 mRNA [12] X57522_at "TAP1 Transporter 1, ABC (ATP binding cassette)" [13] X60486_at H4/g gene for H4 histone [14] Z48579_at Disintegrin-metalloprotease (partial) [15] Z48633_at GB DEF = Retrotransposon [16] D25304_at "KIAA0006 gene, partial cds" [17] U18259_at Clone CIITA-8 MHC class II transactivator CIITA mRNA [18] D13631_s_at KIAA0006 gene [19] HG2797-HT2906_s_at "Clathrin, Light Polypeptide B, Alt. Splice 2" [20] Z69030_s_at "PPP2R4 Protein phosphatase 2A, regulatory subunit B' alpha-1" [21] U90546_at Butyrophilin (BTF4) mRNA ------------------------------------------------------------ clusterID = 25 # of genes = 14 -------------------------- [1] AFFX-M27830_5_at AFFX-M27830_5_at (endogenous control) [2] AFFX-M27830_M_at AFFX-M27830_M_at (endogenous control) [3] D38305_at Tob [4] M76424_at Carbonic anhydrase VII (CA VII) gene [5] U25138_at MaxiK potassium channel beta subunit mRNA [6] X58529_at IGHM Immunoglobulin mu [7] X60483_at GB DEF = H4/d gene for H4 histone [8] X69111_at "ID3 Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein" [9] X80198_at MLN64 mRNA [10] J00268_s_at INS Insulin [11] M84371_rna1_s_at CD19 gene [12] M65214_s_at TCF3 Transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) [13] X97267_rna1_s_at LPAP gene [14] M28170_at CD19 CD19 antigen ------------------------------------------------------------ clusterID = 26 # of genes = 15 -------------------------- [1] D50840_at Ceramide glucosyltransferase [2] D50913_at "KIAA0123 gene, partial cds" [3] L36033_at SDF1 Stromal cell-derived factor 1 [4] M15856_at LPL Lipoprotein lipase [5] M91196_at ICSBP1 Interferon consensus sequence binding protein 1 [6] S80562_at "CNN3 Calponin 3, acidic" [7] U53830_at Interferon regulatory factor 7 (humirf7) mRNA [8] S71043_rna1_s_at "Ig alpha 2=immunoglobulin A heavy chain allotype 2 {constant region, germ line} [human, peripheral blood neutrophils, Genomic, 1799 nt]" [9] M87789_s_at "(hybridoma H210) anti-hepatitis A IgG variable region, constant region, complementarity-determining regions mRNA" [10] M19309_s_at "TNNT1 Troponin T1, skeletal, slow" [11] M63438_s_at GLUL Glutamate-ammonia ligase (glutamine synthase) [12] X57809_s_at IGL@ Immunoglobulin lambda light chain [13] M34516_at "GB DEF = Omega light chain protein 14.1 (Ig lambda chain related) gene, exon 3" [14] M34516_r_at "GB DEF = Omega light chain protein 14.1 (Ig lambda chain related) gene, exon 3" [15] L02326_f_at (clone Hu lambda-17) lambda-like gene ------------------------------------------------------------ clusterID = 27 # of genes = 23 -------------------------- [1] AB000115_at mRNA [2] L06633_at Transcription factor mRNA [3] M12759_at IMMUNOGLOBULIN J CHAIN [4] M22489_at BMP2 Bone morphogenetic protein 2 [5] M28827_at CD1C CD1c antigen (thymocyte antigen) [6] M33882_at "MX1 Myxovirus (influenza) resistance 1, homolog of murine (interferon-inducible protein p78)" [7] M59830_at HEAT SHOCK 70 KD PROTEIN 1 [8] M60721_at Homeobox gene [9] U15932_at Protein tyrosine phosphatase mRNA [10] U65093_at Msg1-related gene 1 (mrg1) mRNA [11] U77735_at Pim-2 protooncogene homolog pim-2h mRNA [12] U90547_at Ro/SSA ribonucleoprotein homolog (RoRet) mRNA [13] V01512_rna1_at Cellular oncogene c-fos (complete sequence) [14] X63753_at SON SON DNA binding protein [15] X67325_at INTERFERON-ALPHA INDUCED 11.5 KD PROTEIN [16] X68277_at Alpha-tubulin mRNA [17] X99699_at GB DEF = XIAP associated factor-1 [18] Z30426_at CD69 CD69 antigen (early T cell activation antigen) [19] D90070_s_at LRP1 ATL-derived PMA-responsive (APR) peptide [20] J03915_s_at CHGA Chromogranin A [21] J02621_s_at Non-histone chromosomal protein HMG-14 mRNA [22] L05072_s_at IRF1 Interferon regulatory factor 1 [23] X67235_s_at PRHX Proline-rich homeodomain-containing transcription factor (symbol provisional) ------------------------------------------------------------ clusterID = 28 # of genes = 15 -------------------------- [1] AF008445_at Phospholipid scramblase mRNA [2] L40387_at "GB DEF = Thyroid receptor interactor (TRIP14) gene, 3' end of cds" [3] M13755_at "G1P2 Interferon, alpha-inducible protein (clone IFI-15K)" [4] M24594_at IFI56 Interferon-induced protein 56 [5] M25897_at PF4 Platelet factor 4 [6] M54995_at PPBP Connective tissue activation peptide III [7] M97936_at SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA [8] U29680_at Bcl-2 related (Bfl-1) mRNA [9] U52513_at RIG-G mRNA [10] U72661_at Ninjurin1 mRNA [11] X12451_at CTSL Cathepsin L [12] M31551_s_at "PAI2 Plasminogen activator inhibitor, type II (arginine-serpin)" [13] M21119_s_at LYZ Lysozyme [14] M30703_s_at Amphiregulin (AR) gene [15] X53296_s_at IL1RN Interleukin 1 receptor antagonist ------------------------------------------------------------ clusterID = 29 # of genes = 64 -------------------------- [1] D00723_at GCSH Glycine cleavage system protein H (aminomethyl carrier) [2] D11094_at 26S PROTEASE REGULATORY SUBUNIT 7 [3] D13630_at KIAA0005 gene [4] D14663_at KIAA0107 gene [5] D14838_at FGF9 Fibroblast growth factor 9 (glia-activating factor) [6] D16562_at "ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR" [7] D21852_at "KIAA0029 gene, partial cds" [8] D28118_at DB1 [9] D38549_at "KIAA0068 gene, partial cds" [10] D42043_at "KIAA0084 gene, partial cds" [11] D42054_at KIAA0092 gene [12] D50683_at "TGFBR2 Transforming growth factor, beta receptor II (70-80kD)" [13] D87120_at Cancellous bone osteoblast mRNA for GS3786 [14] D87447_at KIAA0258 gene [15] J04058_at "ETFA Electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II)" [16] J04615_at SNRPN Small nuclear ribonucleoprotein polypeptide N [17] L06132_at VDAC1 Voltage-dependent anion channel 1 [18] L06845_at CARS Cysteinyl-tRNA synthetase [19] L21936_at "SDH2 Succinate dehydrogenase 2, flavoprotein (Fp) subunit" [20] L37043_at "CSNK1E Casein kinase 1, epsilon" [21] M15796_at PCNA Proliferating cell nuclear antigen [22] M15841_at SNRPB2 Small nuclear ribonucleoprotein polypeptide B'' [23] M18737_rna1_at GJA1P1 gene extracted from Human Hanukah factor serine protease (HuHF) mRNA [24] M21259_at SNRPE Small nuclear ribonucleoprotein polypeptide E [25] M22760_at CYTOCHROME C OXIDASE POLYPEPTIDE VA PRECURSOR [26] M62810_at TCF6L1 Transcription factor 6-like 1 (mitochondrial transcription factor 1-like) [27] M86667_at HnRNP C2 protein mRNA [28] M88282_at T-CELL SURFACE PROTEIN TACTILE PRECURSOR [29] M93426_at "PTPRZ Protein tyrosine phosphatase, receptor-type, zeta polypeptide" [30] M94556_at SSBP Single-stranded DNA-binding protein [31] U18242_at CAMLG Calcium modulating ligand [32] U25029_at GRL Glucocorticoid receptor alpha {alternative products} [33] U25849_at "ACP1 Acid phosphatase 1, soluble" [34] U26648_at STX5A Syntaxin 5A [35] U28831_at "Protein immuno-reactive with anti-PTH polyclonal antibodies mRNA, partial cds" [36] U34252_at ALDH7 Aldehyde dehydrogenase 7 (NOTE: redefinition of symbol) [37] U39317_at E2 ubiquitin conjugating enzyme UbcH5B (UBCH5B) mRNA [38] U41515_at Deleted in split hand/split foot 1 (DSS1) mRNA [39] U48959_at Myosin light chain kinase (MLCK) mRNA [40] U50939_at Amyloid precursor protein-binding protein 1 mRNA [41] U51432_at Nuclear protein Skip mRNA [42] U61145_at Enhancer of zeste homolog 2 (EZH2) mRNA [43] U76421_at DsRNA adenosine deaminase DRADA2b (DRADA2b) mRNA [44] U79270_at "Clone 23707 mRNA, partial cds" [45] U84720_at mRNA export protein Rae1 (RAE1) mRNA [46] U90904_at Clone 23773 mRNA sequence [47] U94586_at NADH:ubiquinone oxidoreductase MLRQ subunit mRNA [48] U95740_rna2_at 362G6.2 gene extracted from Human chromosome 16p13.1 BAC clone CIT987SK-362G6 complete sequence [49] X13238_at COX6C Cytochrome c oxidase subunit VIc [50] X64838_at RSN Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) [51] X74008_at "PPP1CC Protein phosphatase 1, catalytic subunit, gamma isoform" [52] X76302_at RY-1 mRNA for putative nucleic acid binding protein [53] X76732_at DNA-BINDING PROTEIN NEFA PRECURSOR [54] X77794_at Cyclin G1 mRNA [55] Z81326_at Protease inhibitor 12 (PI12; neuroserpin) [56] X12671_rna1_at Hnrnp a1 protein gene extracted from Human gene for heterogeneous nuclear ribonucleoprotein (hnRNP) core protein A1 [57] X83416_s_at "PrP gene, exon 2" [58] X14684_s_at SSB Sjogren syndrome antigen B (autoantigen La) [59] M26730_s_at "GB DEF = Mitochondrial ubiquinone-binding protein (QP) gene, exon 4" [60] M37457_at "Na+,K+ -ATPase catalytic subunit alpha-III isoform gene" [61] U61397_s_at Ubiquitin-homology domain protein PIC1 mRNA [62] HG2147-HT2217_at "Mucin 3, Intestinal (Gb:M55405)" [63] M90356_f_at GB DEF = BTF3 protein homologue gene [64] U29175_at Transcriptional activator hSNF2b ------------------------------------------------------------ clusterID = 30 # of genes = 31 -------------------------- [1] D14874_at ADM Adrenomedullin [2] D28423_at "GB DEF = Pre-mRNA splicing factor SRp20, 5'UTR (sequence from the 5'cap to the start codon)" [3] D49410_at "IL3RA Interleukin 3 receptor, alpha (low affinity)" [4] HG3088-HT3263_at "Splicing Factor Sc35, Alt Splice Form 3" [5] HG4747-HT5195_at "Nadh-Ubiquinone Oxidoreductase, 51 Kda Subunit" [6] L36983_at Dynamin (DNM) mRNA [7] M12174_at ARH6 Aplysia ras-related homolog 6 [8] M60278_at DTR Diphtheria toxin receptor (heparin-binding epidermal growth factor-like growth factor) [9] M64925_at "MPP1 Membrane protein, palmitoylated 1 (55kD)" [10] M93425_at "PTPN12 Protein tyrosine phosphatase, non-receptor type 12" [11] S69115_at "Granulocyte colony-stimulating factor induced gene [human, CML patient, bone marrow mononuclear cells, mRNA, 833 nt]" [12] U09579_at "CDKN1A Cyclin-dependent kinase inhibitor 1A (p21, Cip1)" [13] U50553_at Helicase like protein 2 mRNA [14] U51586_at "Siah binding protein 1 (SiahBP1) mRNA, partial cds" [15] U57316_at GCN5 (hGCN5) gene [16] U72209_at YY1-associated factor 2 (YAF2) mRNA [17] U79273_at Clone 23933 mRNA sequence [18] U94855_at Translation initiation factor 3 47 kDa subunit mRNA [19] X15357_at GB DEF = Natriuretic peptide receptor (ANP-A receptor) [20] X56199_at "XIST, coding sequence ""a"" mRNA (locus DXS399E)" [21] X56741_at RAS-RELATED PROTEIN RAB-8 [22] X70683_at SOX4 SRY (sex determining region Y)-box 4 [23] X92762_at Tafazzins protein [24] Z50781_at Leucine zipper protein [25] Z68204_at GB DEF = Succinyl CoA synthetase [26] U07139_at CAB3b mRNA for calcium channel beta3 subunit [27] HG1751-HT1768_at Chorionic Somatomammotropin Hormone Cs-5 [28] U09851_s_at ZNF148 Zinc finger protein 148 (pHZ-52) [29] X95325_s_at DNA-BINDING PROTEIN A [30] M27504_s_at "GB DEF = Topoisomerase type II (Topo II) mRNA, partial cds" [31] M24069_at DNA-BINDING PROTEIN A ------------------------------------------------------------ clusterID = 31 # of genes = 20 -------------------------- [1] D38521_at "KIAA0077 gene, partial cds" [2] D87434_at KIAA0247 gene [3] HG2724-HT2820_at "Oncogene Tls/Chop, Fusion Activated" [4] J04027_at Adenosine triphosphatase mRNA [5] M62324_at "Modulator recognition factor I (MRF-1) mRNA, 3' end" [6] M64929_at "PPP2R2A Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform" [7] M73720_at CPA3 Carboxypeptidase A3 (mast cell) [8] U68494_at Hbc647 mRNA sequence [9] X07743_at PLECKSTRIN [10] Y10032_at Putative serine/threonine protein kinase [11] Y12670_at LEPR Leptin receptor [12] Z24724_at PolyA site DNA [13] X81625_at EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 [14] HG2981-HT3125_s_at "Epican, Alt. Splice 1" [15] V00594_at Metallothionein isoform 2 [16] L35249_s_at "ATP6B2 ATPase, H+ transporting, lysosomal (vacuolar proton pump), beta polypeptide, 56/58kD, isoform 2" [17] M16750_s_at PIM1 Pim-1 oncogene [18] M54915_s_at PIM1 Pim-1 oncogene [19] J03910_rna1_at (clone 14VS) metallothionein-IG (MT1G) gene [20] X64177_f_at Metallothionein ------------------------------------------------------------ clusterID = 32 # of genes = 17 -------------------------- [1] D13643_at KIAA0018 gene [2] D63391_at Platelet activating factor acetylhydrolase IB gamma-subunit [3] D82345_at NB thymosin beta [4] J05243_at "SPTAN1 Spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)" [5] L25851_at INTEGRIN ALPHA-E PRECURSOR [6] M24398_at PTMS Parathymosin [7] M63928_at CD27 CD27 antigen (T cell activation antigen) [8] M74089_at "TB1 gene mRNA, 3' end" [9] S78187_at M-PHASE INDUCER PHOSPHATASE 2 [10] U16954_at (AF1q) mRNA [11] X04145_at "CD3G CD3G antigen, gamma polypeptide (TiT3 complex)" [12] X51956_rna1_at ENO2 gene for neuron specific (gamma) enolase [13] X87241_at HFat protein [14] Z47055_s_at "GB DEF = Partial cDNA sequence, farnesyl pyrophosphate synthetase like-4" [15] M32879_at CYP11B1 Cytochrome P450 11 beta [16] S37730_s_at "GB DEF = Insulin-like growth factor binding protein-2 [human, placenta, Genomic, 1342 nt, segment 4 of 4]" [17] U69140_s_at RPS26 Ribosomal protein S26 ------------------------------------------------------------ clusterID = 33 # of genes = 86 -------------------------- [1] AF009301_at GB DEF = TEB4 protein mRNA [2] D21090_at XP-C repair complementing protein (p58/HHR23B) [3] D28476_at KIAA0045 gene [4] D31767_at KIAA0058 gene [5] D31888_at "KIAA0071 gene, partial cds" [6] D38524_at NT5 5' nucleotidase (CD73) [7] D38552_at "KIAA0073 gene, partial cds" [8] D42084_at "KIAA0094 gene, partial cds" [9] D42087_at "KIAA0118 gene, partial cds" [10] D50917_at KIAA0127 gene [11] D63874_at HMG1 High-mobility group (nonhistone chromosomal) protein 1 [12] D63875_at KIAA0155 gene [13] D63878_at PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR [14] D63881_at "KIAA0160 gene, partial cds" [15] D67029_at SEC14L SEC14 (S. cerevisiae)-like [16] D79996_at KIAA0174 gene [17] D80004_at "KIAA0182 gene, partial cds" [18] D80006_at "KIAA0184 gene, partial cds" [19] D83004_at Epidermoid carcinoma mRNA for ubiquitin-conjugating enzyme E2 similar to Drosophila bendless gene product [20] D83776_at "KIAA0191 gene, partial cds" [21] D83785_at KIAA0200 gene [22] D86973_at "KIAA0219 gene, partial cds" [23] D87445_at KIAA0256 gene [24] D87450_at "KIAA0261 gene, partial cds" [25] D87452_at KIAA0263 gene [26] D87684_at "KIAA0242 gene, partial cds" [27] L07758_at IEF SSP 9502 mRNA [28] L13689_at BMI1 Murine leukemia viral (bmi-1) oncogene homolog [29] L13761_rna1_at "Dihydrolipoamide dehydrogenase gene, exon 14" [30] L14076_at PRE-MRNA SPLICING FACTOR SRP75 [31] L27841_at Autoantigen pericentriol material 1 (PCM-1) mRNA [32] L38951_at Importin beta subunit mRNA [33] L43631_at "Scaffold attachment factor (SAF-B) gene, partial cds" [34] L76703_at B56epsilon mRNA [35] M23114_at "ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2" [36] M23161_at Transposon-like element mRNA [37] M31899_at ERCC3 DNA repair helicase ERCC3 [38] M36341_at ARF4 ADP-ribosylation factor 4 [39] M37197_at COUP TRANSCRIPTION FACTOR [40] M74002_at Arginine-rich nuclear protein mRNA [41] M88108_at P62 mRNA [42] M91585_at Br140 mRNA [43] M96982_at SPLICING FACTOR U2AF 35 KD SUBUNIT [44] S72008_at CDC10 Cell division cycle 10 (homologous to CDC10 of S. cerevisiae [45] S74221_at IK [46] U10117_at CALMODULIN [47] U21858_at HISTONE H3.3 [48] U24166_at EB1 mRNA [49] U30888_at TRNA-guanine transglycosylase mRNA [50] U37547_at IAP homolog B (MIHB) mRNA [51] U46571_at Tetratricopeptide repeat protein (tpr2) mRNA [52] U47101_at "NifU-like protein (hNifU) mRNA, partial cds" [53] U47414_at Cyclin G2 mRNA [54] U50078_at Guanine nucleotide exchange factor p532 mRNA [55] U51166_at G/T mismatch-specific thymine DNA glycosylase mRNA [56] U58089_at "Hs-cul-3 mRNA, partial cds" [57] U69546_at RNA binding protein Etr-3 mRNA [58] U76992_at Tat-SF1 mRNA [59] U77718_at Desmosome associated protein pinin mRNA [60] U79291_at Clone 23721 mRNA sequence [61] U80017_rna3_at "Smn gene (survival motor neuron protein SMN) extracted from Human basic transcription factor 2 p44 (btf2p44) gene, partial cds, neuronal apoptosis inhibitory protein (naip) and survival motor neuron protein (smn) genes" [62] U95740_rna1_at 362G6.1 gene (unknown protein CIT987SK_362G6_1) extracted from Human chromosome 16p13.1 BAC clone CIT987SK-362G6 complete sequence [63] X12791_at SRP19 Signal recognition particle 19 kD protein [64] X59405_at "MCP Membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" [65] X66899_at EWSR1 Ewing sarcoma breakpoint region 1 [66] X69141_at FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE [67] X74496_at PREP Prolyl endopeptidase [68] X82103_at Beta-COP [69] X87838_at "CTNNB1 Catenin (cadherin-associated protein), beta 1 (88kD)" [70] X89750_at TGIF protein [71] X94232_at Novel T-cell activation protein [72] X98743_at RNA helicase (Myc-regulated dead box protein) [73] X99720_rna1_at TPRC gene [74] Z29064_at EPS15 Epidermal growth factor receptor pathway substrate 15 [75] Z29505_at Alpha-CP1 mRNA [76] Z35491_at Novel glucocorticoid receptor-associated protein [77] U94832_at KH type splicing regulatory protein KSRP mRNA [78] U58046_s_at KIAA0139 gene [79] M96954_s_at TIAL1 TIA1 cytotoxic granule-associated RNA-binding protein-like 1 [80] X75755_rna1_s_at PR264 gene [81] U07806_s_at TOP1 DNA topoisomerase I [82] X05855_s_at EEF1G Translation elongation factor 1 gamma [83] X62083_s_at RING3 PROTEIN [84] U00947_s_at HNRPA1 Heterogeneous nuclear ribonucleoprotein A1 [85] L08904_at H2K binding factor 2 (KBF2) mRNA [86] U09587_at GARS Glycyl-tRNA synthetase ------------------------------------------------------------ clusterID = 34 # of genes = 33 -------------------------- [1] D00726_at FECH Ferrochelatase (protoporphyria) [2] D87116_at DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3 [3] HG620-HT620_at "Tyrosine Phosphatase, Epsilon" [4] L20971_at "PDE4B Phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4)" [5] L40904_at LGALS1 Ubiquinol-cytochrome c reductase core protein II [6] M29927_at OAT Ornithine aminotransferase (gyrate atrophy) [7] M60298_at EPB42 Erythrocyte membrane protein band 4.2 [8] S79781_at "GB DEF = WT1 {antisense promoter, intron 1} [human, kidney, Genomic, 780 nt]" [9] U04270_at Putative potassium channel subunit (h-erg) mRNA [10] U09860_at "PRSS7 Protease, serine, 7 (enterokinase)" [11] U29091_at GB DEF = Selenium-binding protein (hSBP) mRNA [12] U46901_at "SNCA Synuclein, alpha (non A4 component of amyloid precursor)" [13] U65404_at Erythroid-specific transcription factor EKLF mRNA [14] X04327_at "BPGM 2,3-bisphosphoglycerate mutase" [15] X64364_at BSG Basigin [16] X75315_at FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) [17] X77548_at CDNA for RFG [18] X77737_at "Red cell anion exchanger (EPB3, AE1, Band 3) 3' non-coding region" [19] X90857_at "-14 gene, containing globin regulatory element" [20] X90999_at Glyoxalase II [21] Z23115_at APOPTOSIS REGULATOR BCL-X [22] Z29331_at UBE2H Ubiquitin-conjugating enzyme E2H (homologous to yeast UBC8) [23] Z83821_cds2_at "5-aminolevulinic acid synthase gene extracted from Human DNA sequence from PAC 296K21 on chromosome X contains cytokeratin exon, delta-aminolevulinate synthase (erythroid); 5-aminolevulinic acid synthase.(EC 2.3.1.37). 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (EC 2.7.1.105, EC 3.1.3.46), ESTs and STS" [24] L07648_at MXI1 mRNA [25] X75918_at IMMEDIATE-EARLY RESPONSE PROTEIN NOT [26] D38537_s_at Protoporphyrinogen oxidase [27] HG2175-HT2245_s_at "Myosin, Heavy Polypeptide 10, Non-Muscle" [28] Y00339_s_at CA2 Carbonic anhydrase II [29] J05016_rna1_s_at (clone pA3) protein disulfide isomerase related protein (ERp72) mRNA [30] U40152_s_at Origin recognition complex 1 (HsORC1) mRNA [31] U41315_rna1_s_at Ring zinc-finger protein (ZNF127-Xp) gene and 5' flanking sequence [32] X17644_s_at GSPT1 G1 to S phase transition 1 [33] U57341_at "GB DEF = Neurofilament triplet L protein mRNA, partial cds" ------------------------------------------------------------ clusterID = 35 # of genes = 42 -------------------------- [1] D13636_at KIAA0011 gene [2] D25538_at KIAA0037 gene [3] D45248_at Proteasome activator hPA28 subunit beta [4] D63480_at "KIAA0146 gene, partial cds" [5] D63482_at KIAA0148 gene [6] D63876_at "KIAA0154 gene, partial cds" [7] D86976_at "KIAA0223 gene, partial cds" [8] D87455_at KIAA0266 gene [9] D87464_at KIAA0274 gene [10] J04501_at GYS1 Glycogen synthase 1 (muscle) [11] L25444_at TBP-associated factor TAFII80 mRNA [12] L36818_at INPPL1 Inositol polyphosphate phosphatase-like protein 1 (51C protein) [13] M32313_at "SRD5A1 Steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)" [14] M32334_at ICAM2 Intercellular adhesion molecule 2 [15] M34668_at "PTPRA Protein tyrosine phosphatase, receptor type, alpha polypeptide" [16] M81829_at GB DEF = Somatostatin receptor isoform 1 gene [17] M91029_cds2_at AMP deaminase (AMPD2) mRNA [18] U03851_at "Capping protein alpha mRNA, partial cds" [19] U19796_at Melanoma antigen p15 mRNA [20] U30894_at N-sulphoglucosamine sulphohydrolase mRNA [21] U37248_at Alpha-mannosidase (6A8) mRNA [22] U51477_at Diacylglycerol kinase zeta mRNA [23] U66464_at Hematopoietic progenitor kinase (HPK1) mRNA [24] U68566_at "HS1 binding protein HAX-1 mRNA, nuclear gene encoding mitochondrial protein" [25] U69141_at GCDH Glutaryl-Coenzyme A dehydrogenase [26] U75370_at "Mitochondrial RNA polymerase mRNA, nuclear gene encoding mitochondrial protein" [27] U79288_at Clone 23682 mRNA sequence [28] U81556_at Hypothetical protein A4 mRNA [29] X14813_at ACAA Acetyl-Coenzyme A acyltransferase (peroxisomal 3-oxoacyl-Coenzyme A thiolase) [30] X52192_at FES Feline sarcoma (Snyder-Theilen) viral (v-fes)/Fujinami avian sarcoma (PRCII) viral (v-fps) oncogene homolog [31] X71490_at "ATP6E ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD" [32] X77094_at P40phox [33] X99325_at Alpha-tubulin mRNA [34] Z56281_at Interferon regulatory factor 3 [35] Z68747_at GB DEF = Imogen 38 [36] X57351_s_at RPS3 Ribosomal protein S3 [37] X66113_s_at AUTOANTIGEN PM-SCL [38] Z31560_s_at SOX2 SRY (sex determining region Y)-box 2 [39] U72882_s_at "Interferon-induced leucine zipper protein (IFP35) mRNA, partial cds" [40] S69272_s_at Cytoplasmic antiproteinase [41] X59932_s_at CSK C-src tyrosine kinase [42] U20499_at Estrogen sulfotransferase mRNA ------------------------------------------------------------ clusterID = 36 # of genes = 38 -------------------------- [1] D29641_at HYPOTHETICAL MYELOID CELL LINE PROTEIN 2 [2] D80005_at "KIAA0183 gene, partial cds" [3] HG3748-HT4018_at "Basic Transcription Factor, 44 Kda Subunit" [4] HG987-HT987_at Mac25 [5] J04794_at ALCOHOL DEHYDROGENASE [6] L04733_at KINESIN LIGHT CHAIN [7] L11373_at Protocadherin 43 mRNA for abbreviated PC43 [8] L20298_at "Transcription factor (CBFB) mRNA, 3' end" [9] L41870_at RB1 Retinoblastoma 1 (including osteosarcoma) [10] M10901_at GRL Glucocorticoid receptor [11] M20471_at CLTA Clathrin light chain A [12] M23379_at RASA1 GTPase-activating protein ras p21 (RASA) [13] M33680_at 26-kDa cell surface protein TAPA-1 mRNA [14] M54992_at CD72 CD72 antigen [15] M69023_at Globin gene [16] M73047_at TPP2 Tripeptidyl peptidase II [17] M77142_at NUCLEOLYSIN TIA-1 [18] M83233_at "TCF12 Transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)" [19] U02687_at Growth factor receptor tyrosine kinase (STK-1) mRNA [20] U10485_at Lymphoid-restricted membrane protein (Jaw1) mRNA [21] U18291_at CDC16Hs mRNA [22] U45955_at "Neuronal membrane glycoprotein M6b mRNA, partial cds" [23] U49844_at Protein kinase ATR mRNA [24] U51903_at RasGAP-related protein (IQGAP2) mRNA [25] U73737_at GTBP DNA G/T mismatch-binding protein [26] U77948_at "KAI1 Kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4))" [27] X05276_at TPM4 Tropomyosin 4 (fibroblast) [28] X16983_at "ITGA4 Integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)" [29] X59841_at PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-3 [30] X66534_at "GUANYLATE CYCLASE SOLUBLE, ALPHA-3 CHAIN" [31] Y00636_at "CD58 CD58 antigen, (lymphocyte function-associated antigen 3)" [32] HG651-HT4201_at "Adducin, Alpha Subunit, Alt. Splice 2" [33] L13773_at AF-4 mRNA [34] M14745_at BCL2 B cell lymphoma protein 2 [35] X72889_at Transcriptional activator hSNF2a [36] D28473_s_at IARS Isoleucine-tRNA synthetase [37] L00634_s_at "FNTA Farnesyltransferase, CAAX box, alpha" [38] U46006_s_at GB DEF = Smooth muscle LIM protein (h-SmLIM) mRNA ------------------------------------------------------------ clusterID = 37 # of genes = 30 -------------------------- [1] AF006041_at "Fas-binding protein (DAXX) mRNA, partial cds" [2] D50863_at TESK1 [3] D86962_at KIAA0207 gene [4] D87024_at GB DEF = (lambda) DNA for immunoglobin light chain [5] L13203_at HNF-3/fork-head homolog-3 HFH-3 mRNA [6] M17754_at BN51T BN51 (BHK21) temperature sensitivity complementing [7] M34041_at GB DEF = Alpha-2-adrenergic receptor (alpha-2 c2) gene [8] S58733_at Pp52 [9] S70609_at "GB DEF = Glycine transporter type 1b [human, substantia nigra, mRNA, 2364 nt]" [10] U02310_at FKHR Homolog 1 of Drosophila forkhead (rhabdomyosarcoma) [11] U06088_at N-ACETYLGALACTOSAMINE-6-SULFATASE PRECURSOR [12] U07664_at HB9 homeobox gene [13] U25265_at Protein tyrosine kinase t-Ror1 (Ror1) mRNA [14] U31501_at Fragile X mental retardation syndrome related protein (FXR2) mRNA [15] U46461_at GB DEF = Dishevelled homolog (DVL) mRNA [16] U51269_at Armadillo repeat protein mRNA [17] U51587_at Golgi complex autoantigen golgin-97 mRNA [18] U62433_at "CHRNA4 Cholinergic receptor, nicotinic, alpha polypeptide 4" [19] U80457_at Transcription factor SIM2 long form mRNA [20] X59350_at CD22 CD22 antigen [21] X66436_at POSSIBLE GTP-BINDING PROTEIN HSR1 [22] X74764_at Receptor protein tyrosine kinase [23] X96698_at D1075-like gene [24] Z69881_at "Adenosine triphosphatase, calcium" [25] HG3395-HT3573_s_at "Dnaj Homolog (Gb:X63368), Alt. Splice Form 2" [26] J05253_s_at INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN PRECURSOR [27] U75272_s_at PGC Gastricsin (pepsinogen C) [28] L42374_s_at PP2A B56-beta mRNA [29] U61276_s_at Transmembrane protein Jagged 1 (HJ1) mRNA [30] X87344_cds10_at "DMA gene extracted from H.sapiens DMA, DMB, HLA-Z1, IPP2, LMP2, TAP1, LMP7, TAP2, DOB, DQB2 and RING8, 9, 13 and 14 genes" ------------------------------------------------------------ clusterID = 38 # of genes = 37 -------------------------- [1] D13640_at "HLA-C Major histocompatibility complex, class I, C" [2] D31764_at KIAA0064 gene [3] D83782_at "KIAA0199 gene, partial cds" [4] D83783_at "KIAA0192 gene, partial cds" [5] D86970_at KIAA0216 gene [6] D88270_at GB DEF = (lambda) DNA for immunoglobin light chain [7] J03600_at ALOX5 Arachidonate 5-lipoxygenase [8] J03779_at "MME Membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase, CALLA, CD10)" [9] K01911_at NPY Neuropeptide Y [10] L06175_at P5-1 mRNA [11] M11722_at Terminal transferase mRNA [12] M31627_at X BOX BINDING PROTEIN-1 [13] M55621_at MGAT1 N-acetylglucosaminyltransferase I [14] M62994_at Thyroid autoantigen (truncated actin-binding protein) mRNA [15] M89957_at IGB Immunoglobulin-associated beta (B29) [16] M92287_at CCND3 Cyclin D3 [17] M98045_at Folylpolyglutamate synthetase mRNA [18] U28833_at Down syndrome critical region protein (DSCR1) mRNA [19] U65932_at Extracellular matrix protein 1 (ECM1) mRNA [20] U79285_at GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE [21] U90878_at LIM domain protein CLP-36 mRNA [22] X15573_at PFKL Phosphofructokinase (liver type) [23] X66401_cds1_at "LMP2 gene extracted from H.sapiens genes TAP1, TAP2, LMP2, LMP7 and DOB" [24] X69838_at G9a [25] X78031_at "Alpha(1,3)fucosyltransferase mRNA" [26] X80230_at mRNA (clone C-2k) mRNA for serine/threonine protein kinase [27] X82240_rna1_at TCL1 gene (T cell leukemia) extracted from H.sapiens mRNA for Tcell leukemia/lymphoma 1 [28] X99920_at S100 calcium-binding protein A13 [29] Z14982_rna1_at MHC-encoded proteasome subunit gene LAMP7-E1 gene (proteasome subunit LMP7) extracted from H.sapiens gene for major histocompatibility complex encoded proteasome subunit LMP7 [30] D00097_s_at "APCS Amyloid P component, serum" [31] D13666_s_at Osteoblast specific factor 2 (OSF-2os) [32] HG1877-HT1917_s_at "Myelin Basic Protein, Alt. Splice Form 4" [33] L08835_rna2_s_at DM kinase gene (myotonic dystrophy kinase) extracted from Human myotonic dystrophy kinase (DM kinase) gene [34] M63838_s_at Interferon-gamma induced protein (IFI 16) gene [35] X17093_at "HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, F ALPHA CHAIN PRECURSOR" [36] M27749_at GB DEF = Immunoglobulin-related 14.1 protein mRNA [37] M27749_r_at GB DEF = Immunoglobulin-related 14.1 protein mRNA ------------------------------------------------------------ clusterID = 39 # of genes = 38 -------------------------- [1] D13645_at KIAA0020 gene [2] D21853_at EUKARYOTIC INITIATION FACTOR 4A-LIKE NUK-34 [3] D30655_at EIF4A2 Eukaryotic translation initiation factor 4A (eIF-4A) isoform 2 [4] D45906_at LIMK-2 [5] D49489_at Protein disulfide isomerase-related protein P5 [6] D80003_at "KIAA0181 gene, partial cds" [7] D87436_at KIAA0249 gene [8] HG2855-HT2995_at "Heat Shock Protein, 70 Kda (Gb:Y00371)" [9] HG3344-HT3521_at Ubiquitin-Conjugating Enzyme Ubch5 [10] HG662-HT662_at Epstein-Barr Virus Small Rna-Associated Protein [11] L07044_at Calcium/calmodulin-dependent protein kinase (CAMK) isoform B mRNA sequence [12] L07493_at "RECA Replication protein A (E coli RecA homolog, RAD51 homolog)" [13] L09260_at (chromosome 3p25) membrane protein mRNA [14] L27706_at CCT6 Chaperonin containing T-complex subunit 6 [15] L42373_at Protein phosphatase 2A B56-alpha mRNA [16] M22382_at HSPD1 Heat shock 60 kD protein 1 (chaperonin) [17] M29536_at Translational initiation factor 2 beta subunit (elF-2-beta) mRNA [18] M63180_at TARS Threonyl-tRNA synthetase [19] S67325_at "PCCB Propionyl Coenzyme A carboxylase, beta polypeptide" [20] U17418_at PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED PEPTIDE RECEPTOR PRECURSOR [21] U20908_at "GB DEF = Clone 350/2 melanoma ubiquitous mutated protein (MUM-1) gene, partial cds" [22] U41668_at DGUOK Deoxyguanosine kinase [23] U52427_rna1_at RNA polymerase II seventh subunit (rpb-7) gene [24] U53347_at Neutral amino acid transporter B mRNA [25] U54778_at 14-3-3 epsilon mRNA [26] U62136_at "Putative enterocyte differentiation promoting factor mRNA, partial cds" [27] U68063_at Putative splice factor transformer2-beta mRNA [28] X17620_at "NME1 Non-metastatic cells 1, protein (NM23A) expressed in" [29] X51804_at PUTATIVE RECEPTOR PROTEIN [30] X75252_at PBP Prostatic binding protein [31] X91257_at SERYL-TRNA SYNTHETASE [32] Y08612_at RABAPTIN-5 protein [33] Z27113_at DNA-DIRECTED RNA POLYMERASE II 14.4 KD POLYPEPTIDE [34] D21235_at HHR23A protein [35] U72649_at BTG2 (BTG2) mRNA [36] M97347_s_at "GCNT1 Glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" [37] HG1980-HT2023_at "Tubulin, Beta 2" [38] U19765_at CELLULAR NUCLEIC ACID BINDING PROTEIN ------------------------------------------------------------ clusterID = 40 # of genes = 45 -------------------------- [1] D00596_at TYMS Thymidylate synthase [2] D14657_at KIAA0101 gene [3] D26599_at Proteasome subunit HsC7-I [4] D38076_at RANBP1 RAN binding protein 1 [5] D84557_at P105MCM mRNA [6] HG1869-HT1904_at Male Enhanced Antigen [7] HG2415-HT2511_at Transcription Factor E2f-2 [8] HG4073-HT4343_at Cytosolic Acetoacetyl-Coenzyme A Thiolase [9] HG4716-HT5158_at Guanosine 5'-Monophosphate Synthase [10] HG919-HT919_at "Dna Polymerase, Epsilon, Catalytic Subunit" [11] J04031_at MTHFD Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase-formyltetrahydrofolate synthetase [12] L25876_at Protein tyrosine phosphatase (CIP2)mRNA [13] L38696_at "Autoantigen p542 mRNA, 3' end of cds" [14] M16279_at "MIC2 Antigen identified by monoclonal antibodies 12E7, F21 and O13" [15] M36067_at "LIG1 Ligase I, DNA, ATP-dependent" [16] M37583_at H2AZ H2AZ histone [17] M86737_at SSRP1 High mobility group box [18] M91670_at Ubiquitin carrier protein (E2-EPF) mRNA [19] M97856_at NASP Nuclear autoantigenic sperm protein (histone-binding) [20] U20979_at Chromatin assembly factor-I p150 subunit mRNA [21] U24704_at Ras GTPase-activating-like protein (IQGAP1) mRNA [22] U31930_at DUT DUTP pyrophosphatase [23] U35451_at Heterochromatin protein p25 mRNA [24] U56816_at Kinase Myt1 (Myt1) mRNA [25] U63743_at Mitotic centromere-associated kinesin mRNA [26] U70732_rna1_at Glutamate pyruvate transaminase (GPT) gene [27] U72761_at GB DEF = Karyopherin beta 3 mRNA [28] U73379_at Cyclin-selective ubiquitin carrier protein mRNA [29] U91316_at Acyl-CoA thioester hydrolase mRNA [30] X13546_rna1_at Put. HMG-17 protein gene extracted from Human HMG-17 gene for non-histone chromosomal protein HMG-17 [31] X54941_at CKS1 CDC28 protein kinase 1 [32] X54942_at CKS2 CDC28 protein kinase 2 [33] X69433_at "IDH2 Isocitrate dehydrogenase 2 (NADP+), mitochondrial" [34] X74795_at CDC46 HOMOLOG [35] X76040_at "HLON ATP-dependent protease mRNA, nuclear gene encoding mitochondrial protein" [36] Y13115_at GB DEF = Serine/threonine protein kinase SAK [37] Z49878_at Guanidinoacetate N-methyltransferase [38] Z50853_at CLPP [39] HG3342-HT3519_s_at Id1 [40] V00599_s_at mRNA fragment encoding beta-tubulin. (from clone D-beta-1) [41] M60784_s_at U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A [42] X62534_s_at HMG2 High-mobility group (nonhistone chromosomal) protein 2 [43] X85137_s_at Kinesin-related protein [44] U70439_s_at PHAPI2b protein [45] J00314_at mRNA fragment encoding beta-tubulin. (from clone D-beta-1) ------------------------------------------------------------ clusterID = 41 # of genes = 17 -------------------------- [1] D13639_at CCND2 Cyclin D2 [2] D64109_at Tob family [3] L32976_at Protein kinase (MLK-3) mRNA [4] M29971_at MGMT 6-O-methylguanine-DNA methyltransferase (MGMT) [5] M60922_at Surface antigen mRNA [6] U51240_at "KIAA0085 gene, partial cds" [7] U62317_rna7_at Hypothetical protein 384D8_7 gene extracted from Chromosome 22q13 BAC Clone CIT987SK-384D8 complete sequence [8] U68485_at Amphiphysin II mRNA [9] U82275_at Immunoglobulin-like transcript 1 mRNA [10] U97105_at Dihydropyrimidinase related protein-2 [11] X04412_at "GSN Gelsolin (amyloidosis, Finnish type)" [12] X55740_at NT5 5' nucleotidase (CD73) [13] X79353_at Rab GDI alpha [14] D83260_s_at HXC-26 mRNA [15] U89922_s_at LTB Lymphotoxin-beta [16] M55513_s_at "KCNA5 Potassium voltage-gated channel, shaker-related subfamily, member 5" [17] U76764_s_at CD97 CD97 antigen (leucocyte antigen) ------------------------------------------------------------ clusterID = 42 # of genes = 24 -------------------------- [1] D43767_at Chemokine [2] HG4460-HT4729_at "Immunoglobulin Heavy Chain, Vdjc Regions (Gb:L23564)" [3] L31584_at CMKBR7 Chemokine (C-C) receptor 7 [4] L41919_rna1_at HIC-1 gene fragment [5] M15059_at "FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23A)" [6] M30185_at "CETP Cholesteryl ester transfer protein, plasma" [7] M37766_at CD48 CD48 antigen (B-cell membrane protein) [8] U03891_at "Phorbolin I mRNA, partial cds" [9] U19261_at Epstein-Barr virus-induced protein mRNA [10] X02530_at INP10 Interferon (gamma)-induced cell line; protein 10 from [11] X05196_at Aldolase C gene [12] X16396_at MTHFD NAD-dependent methylene tetrahydrofolate dehydrogenase cyclohydrolase [13] X91249_at WHITE PROTEIN HOMOLOG [14] Z29574_at BCMA B cell maturation factor [15] Z36714_at CCNF Cyclin F [16] M83664_at "HLA-DPB1 Major histocompatibility complex, class II, DP beta 1" [17] U83171_at Macrophage-derived chemokine precursor (MDC) mRNA [18] L08096_s_at CD70 CD70 antigen (CD27 ligand) [19] L00022_s_at IG EPSILON CHAIN C REGION [20] K01160_s_at HLA-DQA1 MHC class II DQ alpha [21] M26041_s_at HLA-DQA1 MHC class II DQ alpha [22] M62628_s_at "GB DEF = Alpha-1 Ig germline C-region membrane-coding region, 3' end" [23] K02882_cds1_s_at "IGHD gene (immunoglobulin delta-chain) extracted from Human germline IgD chain gene, C-region, C-delta-1 domain" [24] U24685_at "GB DEF = Anti-B cell autoantibody IgM heavy chain variable V-D-J region (VH4) gene, clone E11, VH4-63 non-productive rearrangement" ------------------------------------------------------------ clusterID = 43 # of genes = 21 -------------------------- [1] D85429_at DNAJ PROTEIN HOMOLOG 1 [2] HG3884-HT4154_at Homeotic Protein Hpx-42 [3] L19779_at Histone H2A.2 mRNA [4] L28175_at "PTGER2 Prostaglandin E receptor 2 (subtype EP2), 53kD" [5] M11717_rna1_at Heat shock protein (hsp 70) gene [6] M20543_at "ACTA1 Actin, alpha 1, skeletal muscle" [7] M60752_at GB DEF = Histone H2A.1 (H2A) gene [8] M62831_at Transcription factor ETR101 mRNA [9] X51757_at HSPA6 Heat shock 70kD protein 6 (HSP70B') [10] X57129_at HISTONE H1D [11] Z23090_at HSPB1 Heat shock 27kD protein 1 [12] Z83742_at GB DEF = HH2A/c gene [13] M96843_at "ID2 Inhibitor of DNA binding 2, dominant negative helix-loop-helix protein" [14] X57985_rna2_at GL105 gene (histone H2B) extracted from H.sapiens genes for histones H2B.1 and H2A [15] M16707_rna1_at "Histone H4 gene, clone FO108" [16] M16707_rna1_s_at "Histone H4 gene, clone FO108" [17] M97796_s_at "ID2 Inhibitor of DNA binding 2, dominant negative helix-loop-helix protein" [18] X85781_s_at "GB DEF = NOS2 gene, exon 27" [19] X87871_s_at HEPATOCYTE NUCLEAR FACTOR 4 [20] Z80787_at H4/j gene [21] Z80780_f_at GB DEF = H2B/h gene ------------------------------------------------------------ clusterID = 44 # of genes = 17 -------------------------- [1] AF014958_at Chemokine receptor X (CKRX) mRNA [2] D50928_at KIAA0138 gene [3] D83784_at "KIAA0198 gene, partial cds" [4] D85939_at P97 homologous protein [5] L34060_at Cadherin-8 mRNA [6] M81758_at "SODIUM CHANNEL PROTEIN, SKELETAL MUSCLE ALPHA-SUBUNIT" [7] U44755_at PSE-binding factor PTF delta subunit mRNA [8] U73328_at DLX7 Distal-less homeobox 7 [9] U90306_at "GB DEF = Iroquois-class homeodomain protein IRX-4 mRNA, partial cds" [10] X79066_at GB DEF = ERF-1 mRNA 5' end [11] Z32765_at GB DEF = CD36 gene exon 15 [12] HG3920-HT4521_s_at "Homeotic Protein A1, Class I, Alt. Splice 1" [13] M26665_s_at HISTATIN 3 PRECURSOR [14] M36542_s_at "POU2F2 POU domain, class 2, transcription factor 2" [15] Y10141_s_at "GB DEF = DAT1 gene, partial, VNTR" [16] X56687_s_at "Ribosomal RNA upstream binding transcription factor (UBTF) gene, partial cds" [17] Z14978_at ALPHA-CENTRACTIN ------------------------------------------------------------ clusterID = 45 # of genes = 52 -------------------------- [1] AFFX-HSAC07/X00351_M_st AFFX-HSAC07/X00351_M_st (endogenous control) [2] AF003743_at "GB DEF = Delayed rectifier potassium channel (KVLQT1-Iso5) mRNA, 5' UTR and partial cds" [3] D00632_at GPX3 Glutathione peroxidase 3 (plasma) [4] D30742_at CAMK4 Calcium/calmodulin-dependent protein kinase IV [5] D87467_at KIAA0277 gene [6] D88613_at HGCMa [7] HG4660-HT5073_at Microtubule-Associated Protein 1b [8] L04953_at NEURON-SPECIFIC X11 PROTEIN [9] L05512_at HTN1 Histatin 1 [10] L26494_at "POU3F1 POU domain, class 3, transcription factor 1" [11] L77561_at "DGS-D mRNA, 3' end" [12] M95712_at BRAF V-raf murine sarcoma viral oncogene homolog B1 [13] U03398_at Receptor 4-1BB ligand mRNA [14] U03634_at P47 LBC oncogene mRNA [15] U07358_at Protein kinase (zpk) mRNA [16] U20325_at Cocaine and amphetamine regulated transcript CART (hCART) mRNA [17] U20647_at ZNF151 Zinc finger protein 151 (pHZ-67) [18] U28131_at "GB DEF = HMGI-C chimeric transcript mRNA, partial cds" [19] U40998_at Retinal protein (HRG4) mRNA [20] U46569_at Aquaporin-5 (AQP5) gene [21] U49837_at LIM protein MLP mRNA [22] U52830_at "GB DEF = Cri-du-chat region mRNA, clone CSC8" [23] U56244_at HIG-1 mRNA [24] U59302_at Steroid receptor coactivator (SRC-1) mRNA [25] U59736_at Transcription factor (NFATc.b) mRNA [26] U82671_cds2_at "HSP1-A gene extracted from Homo sapiens cosmids Qc14E2, Qc12H12, Qc11F9, Qc10G9, LA1733 and Qc17B8 from Xq28, complete sequence" [27] U91931_at AP-3 complex beta3A subunit mRNA [28] X14675_at GB DEF = Bcr-abl mRNA 5' fragment (clone 3c) [29] X17651_at MYOG Myogenin (myogenic factor 4) [30] X53795_at "KAI1 Kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4))" [31] X54816_at AMBP Alpha-1-microglobulin/bikunin precursor [32] X55885_at ER LUMEN PROTEIN RETAINING RECEPTOR 1 [33] X58521_at NUCLEAR PORE GLYCOPROTEIN P62 [34] X66364_at mRNA PSSALRE for serine/threonine protein kinase [35] X90978_at An acute myeloid leukaemia protein (1793bp) [36] X93996_rna1_at AFX protein [37] X96401_at GB DEF = ROX protein [38] Z25884_at GB DEF = ClC-1 muscle chloride channel protein [39] X15331_s_at PRPS1 Phosphoribosyl pyrophosphate synthetase 1 [40] U77846_rna1_s_at "Elastin gene, partial cds and partial 3'UTR" [41] L37360_s_at GB DEF = (clone hEHK1-L) EHK1 receptor tyrosine kinase ligand (EFL-2) mRNA [42] M28882_s_at CELL SURFACE GLYCOPROTEIN MUC18 PRECURSOR [43] X68985_s_at HLF Hepatic leukemia factor [44] X55037_s_at GATA3 GATA-binding protein 3 [45] X83492_at "GB DEF = Fas/Apo-1 (clone pCRTM11-Fasdelta(4,7))" [46] X90846_at MST1 Macrophage stimulating 1 (hepatocyte growth factor-like) [47] Z80783_at GB DEF = H2B/l gene [48] U35234_at Protein tyrosine phosphatase sigma mRNA [49] U47677_at "Transcription factor E2F like protein [human, mRNA, 2492 nt]" [50] X07730_at APS Prostate specific antigen [51] HG4490-HT4876_f_at "Proline-Rich Protein Prb4, Allele" [52] X99479_f_at Natural killer cell receptor (KIR) mRNA ------------------------------------------------------------ clusterID = 46 # of genes = 26 -------------------------- [1] D21063_at "KIAA0030 gene, partial cds" [2] D31885_at "KIAA0069 gene, partial cds" [3] D55716_at DNA REPLICATION LICENSING FACTOR CDC47 HOMOLOG [4] D63880_at KIAA0159 gene [5] D79988_at KIAA0166 gene [6] HG4074-HT4344_at Rad2 [7] J05614_at "GB DEF = Proliferating cell nuclear antigen (PCNA) gene, promoter region" [8] L19183_at "MAC30 mRNA, 3' end" [9] M15205_at "TK1 Thymidine kinase 1, soluble" [10] M29064_at HNRPA2B1 Heterogeneous nuclear ribonucleoprotein A2/B1 [11] M87339_at "RFC4 Replication factor C, 37-kD subunit" [12] U05340_at P55CDC mRNA [13] U21090_at DNA polymerase delta small subunit mRNA [14] U30872_at CENP-F kinetochore protein mRNA [15] X14850_at HISTONE H2A.X [16] X59543_at RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN [17] X63692_at DNMT DNA methyltransferase [18] X65550_at MKI67 Antigen identified by monoclonal antibody Ki-67 [19] X67951_at PAGA Proliferation-associated gene A (natural killer-enhancing factor A) [20] X74794_at CDC21 HOMOLOG [21] D38073_at MCM3 Minichromosome maintenance deficient (S. cerevisiae) 3 [22] HG2846-HT2983_at "Dihydrofolate Reductase, Alt. Splice 6" [23] X62153_s_at MCM3 Minichromosome maintenance deficient (S. cerevisiae) 3 [24] L24774_s_at "DCI Dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase)" [25] M34458_rna1_s_at Lamin B gene extracted from Human lamin B mRNA [26] U26266_s_at DHPS Deoxyhypusine synthase ------------------------------------------------------------ clusterID = 47 # of genes = 18 -------------------------- [1] D90064_at CGM6 Carcinoembryonic antigen gene family member 6 (NCA-95) [2] J04739_at BPI Bactericidal/permeability-increasing protein [3] M18728_at NCA Non-specific cross reacting antigen [4] M59820_at CSF3R Colony stimulating factor 3 receptor (granulocyte) [5] M81637_at GRANCALCIN [6] M81750_at MNDA Myeloid cell nuclear differentiation antigen [7] M88338_at SERUM PROTEIN MSE55 [8] U11870_rna1_at "Interleukin-8 receptor type A (IL8RBA) gene, promoter and complete cds" [9] X55668_at "PRTN3 Proteinase 3 (serine proteinase, neutrophil, Wegener granulomatosis autoantigen)" [10] X65614_at S100P S100 calcium-binding protein P [11] X65977_at "DEFA4 Defensin, alpha 4, corticostatin " [12] X71135_at GB DEF = Sox3 gene [13] X92744_at BETA-DEFENSIN 1 PRECURSOR [14] Z26248_s_at "PRG2 Proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)" [15] HG4334-HT4604_s_at Glycogenin [16] U90543_s_at Butyrophilin (BTF1) mRNA [17] X04470_s_at RPL32 Ribosomal protein L32 [18] Y00477_at GB DEF = Bone marrow serine protease gene (medullasin) (leukocyte neutrophil elastase gene) ------------------------------------------------------------ clusterID = 48 # of genes = 58 -------------------------- [1] AC002073_cds1_at WUGSC:DJ515N1.2 gene extracted from Human PAC clone DJ515N1 from 22q11.2-q22 [2] D13641_at KIAA0016 gene [3] D14661_at KIAA0105 gene [4] D26068_at "KIAA0038 gene, partial cds" [5] D31884_at KIAA0063 gene [6] D64110_at Tob family [7] D64142_at Histone H1x [8] D78134_at "YWHAZ Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" [9] D79986_at KIAA0164 gene [10] D90209_at ATF4 CAMP-dependent transcription factor ATF-4 (CREB2) [11] L19067_at TRANSCRIPTION FACTOR P65 [12] L20941_at FTH1 Ferritin heavy chain [13] L26247_at RPL3 Ribosomal protein L3 [14] L32977_at UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT PRECURSOR [15] M13903_at "GB DEF = Involucrin gene, exon 2" [16] M21154_at AMD1 S-adenosylmethionine decarboxylase 1 [17] M26880_at UBA52 Ubiquitin A-52 residue ribosomal protein fusion product 1 [18] M28209_at RAS-RELATED PROTEIN RAB-1A [19] M57763_at ARF6 ADP-ribosylation factor 6 [20] M58459_at "RPS4Y Ribosomal protein S4, Y-linked" [21] M59465_at TNFAIP1 Tumor necrosis factor alpha inducible protein A20 [22] M69043_at MAJOR HISTOCOMPATIBILITY COMPLEX ENHANCER-BINDING PROTEIN MAD3 [23] M76766_at GTF2B General transcription factor IIB [24] S81439_at TGF-beta inducible early protein (TIEG) mRNA [25] U00968_at SREBP-1 mRNA [26] U02556_at RP3 mRNA [27] U15552_at Acidic 82 kDa protein mRNA [28] U28686_at Putative RNA binding protein RNPL mRNA [29] U29171_at "CSNK1D Casein kinase 1, delta" [30] U39318_at AF-4 mRNA [31] U41387_at "Gu protein mRNA, partial cds" [32] U44975_at "DNA-binding protein CPBP (CPBP) mRNA, partial cds" [33] U48296_at Protein tyrosine phosphatase PTPCAAX1 (hPTPCAAX1) mRNA [34] U73824_at P97 mRNA [35] U96113_at "GB DEF = Nedd-4-like ubiquitin-protein ligase WWP1 mRNA, partial cds" [36] U96915_at Sin3 associated polypeptide p18 (SAP18) mRNA [37] X78992_at ERF-2 mRNA [38] X79536_at HNRPA1 Heterogeneous nuclear ribonucleoprotein A1 [39] X80692_at ERK3 protein kinase mRNA [40] X80910_at "PPP1CB Protein phosphatase 1, catalytic subunit, beta isoform" [41] X98001_at Geranylgeranyl transferase II [42] X99140_at "GB DEF = Hair keratin, hHb5" [43] Y12856_at "GB DEF = AMP-activated protein kinase alpha-1, partial" [44] Z11697_at CD83 ANTIGEN PRECURSOR [45] Z21507_at EEF1D Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) [46] Z48950_at HISTONE H3.3 [47] Z72499_at Herpesvirus associated ubiquitin-specific protease (HAUSP) [48] D42040_s_at RING3 PROTEIN [49] HG3076-HT3238_s_at "Heterogeneous Nuclear Ribonucleoprotein K, Alt. Splice 1" [50] HG3484-HT3678_s_at Protein Kinase (Gb:M59287) [51] M60483_rna1_s_at Protein phosphatase-2A catalytic subunit-alpha gene extracted from Human protein phosphatase 2A catalytic subunit-alpha gene [52] M75715_s_at EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 [53] X75346_s_at MAP KINASE-ACTIVATED PROTEIN KINASE 2 [54] U26173_s_at BZIP protein NF-IL3A (IL3BP1) mRNA [55] U30827_s_at Splicing factor SRp40-1 (SRp40) mRNA [56] X15729_s_at P68 PROTEIN [57] X56681_s_at JunD mRNA [58] X01703_at Alpha-tubulin mRNA ------------------------------------------------------------ clusterID = 49 # of genes = 23 -------------------------- [1] D16583_at HDC Histidine decarboxylase [2] L31860_at GYPA Glycophorin A [3] M10612_at APOC2 Apolipoprotein C-II [4] M20902_at APOC1 Apolipoprotein CI [5] M31994_at "ALDH1 Aldehyde dehydrogenase 1, soluble" [6] M32886_at SRI Sorcin [7] M34344_at "ITGA2B Integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" [8] M63573_at PPIB Peptidylprolyl isomerase B (cyclophilin B) [9] M63589_at TAL1 T-cell acute lymphocytic leukemia 1 (NOTE: redefinition of symbol) [10] M91036_rna1_at G-gamma globin gene extracted from H.sapiens G-gamma globin and A-gamma globin genes's [11] X06948_at FCER1A High affinity IgE receptor alpha-subunit (FcERI) [12] X64594_at ERYTHROCYTE PLASMA MEMBRANE 50 KD GLYCOPROTEIN [13] X76029_at NEUROMEDIN U-25 PRECURSOR [14] HG3187-HT3366_s_at "Tyrosine Phosphatase 1, Non-Receptor, Alt. Splice 3" [15] HG3954-HT4224_s_at Landsteiner-Wiener Blood Group Glycoprotein (Lw) (Gb:L27671) [16] M29610_at GYPE Glycophorin E [17] M29610_s_at GYPE Glycophorin E [18] U05255_s_at GLYCOPHORIN B PRECURSOR [19] U59632_s_at Cell division control related protein (hCDCrel-1) mRNA [20] M31169_s_at "GB DEF = Propionyl-CoA carboxylase beta-subunit (beta-PCC) gene, partial cds (mutant delta-ATC)" [21] M65292_s_at HFL1 H factor (complement)-like 1 [22] X13955_s_at "MYL4 Myosin, light polypeptide 4, alkali; atrial, embryonic" [23] J02982_f_at GYPB Glycophorin B ------------------------------------------------------------ clusterID = 50 # of genes = 18 -------------------------- [1] D38128_at PTGIR Prostaglandin I2 (prostacyclin) receptor (IP) [2] M55067_at NCF1 47 kD autosomal chronic granulomatous disease protein [3] U40434_at Pre-pro-megakaryocyte potentiating factor [4] U83461_at Putative copper uptake protein (hCTR2) mRNA [5] U95626_rna1_at "Ccr2 gene (ccr2a) extracted from Homo sapiens ccr2b (ccr2), ccr2a (ccr2), ccr5 (ccr5) and ccr6 (ccr6) genes, and lactoferrin (lactoferrin) gene, partial cds, complete sequence" [6] X02910_at TNF Tumor necrosis factor [7] X03663_at "CSF1R Colony stimulating factor 1 receptor, formerly McDonough feline sarcoma viral (v-fms) oncogene homolog" [8] X04011_at CYBB Chronic granulomatous disease [9] X05409_at "ALDH2 Aldehyde dehydrogenase 2, mitochondrial" [10] X13334_at CD14 CD14 antigen [11] X59770_at "INTERLEUKIN-1 RECEPTOR, TYPE II PRECURSOR" [12] Z36531_at FGL1 Fibrinogen-like 1 [13] U20938_at Lymphocyte dihydropyrimidine dehydrogenase mRNA [14] HG2090-HT2152_s_at "External Membrane Protein, 130 Kda (Gb:Z22971)" [15] U01691_s_at "Annexin V (ANX5) gene, 5'-untranslated region" [16] M83652_s_at "PFC Properdin P factor, complement" [17] M83667_rna1_s_at NF-IL6-beta protein mRNA [18] U09178_s_at Dihydropyrimidine dehydrogenase mRNA ------------------------------------------------------------ clusterID = 51 # of genes = 17 -------------------------- [1] D31716_at GC box bindig protein [2] D87076_at "KIAA0239 gene, partial cds" [3] D90224_at TXGP1 Tax-transcriptionally activated glycoprotein 1 (34kD) [4] M38690_at CD9 CD9 antigen [5] M55531_at "SLC2A5 Solute carrier family 2 (facilitated glucose transporter), member 5" [6] U33822_at Tax1-binding protein TXBP181 mRNA [7] X72012_at ENG Endoglin (Osler-Rendu-Weber syndrome 1) [8] X84373_at NUCLEAR FACTOR RIP140 [9] Y09443_at Alkyl-dihydroxyacetonephosphate synthase precursor [10] D38081_at TBXA2R Thromboxane A2 receptor [11] X07203_at CD20 RECEPTOR [12] X52022_at RNA for type VI collagen alpha3 chain [13] L33930_s_at CD24 signal transducer mRNA and 3' region [14] HG2259-HT2348_s_at "Tubulin, Alpha 1, Isoform 44" [15] M27394_s_at GB DEF = B-lymphocyte cell-surface antigen B1 (CD20) [16] X12530_s_at CD20 RECEPTOR [17] X06956_at TUBULIN ALPHA-4 CHAIN ------------------------------------------------------------ clusterID = 52 # of genes = 50 -------------------------- [1] D11086_at IL2RG Interleukin 2 receptor gamma chain [2] D38037_at FK-506 binding protein (fkbp12.6) gene [3] D85815_at DNA for rhoHP1 [4] HG1804-HT1829_at Ornithine Aminotransferase-Like 3 [5] HG4178-HT4448_at Af-17 [6] J04605_at PEPD Peptidase D [7] L15409_at VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR [8] L47738_at Inducible protein mRNA [9] M55265_at "CSNK2A1 Casein kinase 2, alpha 1 polypeptide" [10] M64595_at RAC2 Ras-related C3 botulinum toxin substrate 2 [11] M86707_at GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE [12] M94630_at "Heterogeneous nuclear ribonucleoprotein D (hnRNP D), partial cds, clone cDx4" [13] U08316_at GB DEF = Insulin-stimulated protein kinase 1 (ISPK-1) mRNA [14] U09607_at "JAK3 Janus kinase 3 (a protein tyrosine kinase, leukocyte)" [15] U10439_at ADAR Double-stranded RNA adenosine deaminase [16] U43083_at "GNAQ Guanine nucleotide binding protein (G protein), q polypeptide" [17] U52426_at GOK (STIM1) mRNA [18] U74667_at Tat interactive protein mRNA [19] U79303_at Clone 23882 mRNA [20] U85611_at Snk interacting protein 2-28 mRNA [21] U89896_at Casein kinase I gamma 2 mRNA [22] U96629_rna2_at 2A8.3 gene (hereditary multiple exostoses gene isolog) extracted from Human chromosome 8 BAC clone CIT987SK-2A8 complete sequence [23] X04391_at CD5 CD5 antigen (p56-62) [24] X57346_at "YWHAB Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide" [25] X98248_rna1_at Sortilin [26] Z47727_at RNA polymerase II subunit [27] Z48054_at PXR1 Peroxisome receptor 1 [28] Z93784_at "GB DEF = DNA sequence from PAC 398C22 on chromosome 22q11.2-qter. Contains Brain Protein E46 like sequences, ESTs" [29] M93651_at SET PROTEIN [30] U25988_at PSG13 Pregnancy-specific beta-1 glycoprotein 13 [31] X78338_at MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 [32] Y00097_s_at ANX6 Annexin VI (p68) [33] U50079_s_at GB DEF = Histone deacetylase HD1 mRNA [34] HG1471-HT3923_s_at "Transcription Factor Oct-1a/1b, Alt. Splice 2, Oct-1b" [35] HG651-HT5209_s_at "Adducin, Alpha Subunit, Alt. Splice 3" [36] Z68280_cds2_s_at "Erythrocyte adducin alpha subunit gene extracted from Human DNA sequence from cosmid L25A3, Huntington's Disease Region, chromosome 4p16.3 contains Human tetracycline transporter-like protein and erythrocyte adducin alpha subunit, multiple ESTs and a putative CpG island" [37] M16652_at "ELA1 Elastase 1, pancreatic (elastase IIA)" [38] X75091_s_at SET PROTEIN [39] X73358_s_at HAES-1 mRNA [40] U45328_s_at UBE2I Ubiquitin-conjugating enzyme E2I (homologous to yeast UBC9) [41] U40271_s_at PTK7 Protein-tyrosine kinase 7 [42] U36759_s_at "Pre-T cell receptor alpha-type chain precursor, mRNA" [43] U47686_s_at Signal transducer and activator of transcription Stat5B mRNA [44] U73477_s_at HLA-DR ASSOCIATED PROTEIN I [45] Z25521_s_at "GB DEF = Integrin associated protein mRNA," [46] M36430_s_at "GNB1 Guanine nucleotide binding protein (G protein), beta polypeptide 1" [47] X89399_s_at "Ins(1,3,4,5)P4-binding protein" [48] HG3636-HT3846_at "Myosin, Heavy Polypeptide 9, Non-Muscle" [49] U04241_at Homolog of Drosophila enhancer of split m9/m10 mRNA [50] X67491_f_at GB DEF = Glutamate dehydrogenase ------------------------------------------------------------ clusterID = 53 # of genes = 13 -------------------------- [1] D16469_at "ORF, Xq terminal portion" [2] D83777_at KIAA0193 gene [3] D87460_at "KIAA0270 gene, partial cds" [4] J04111_at "C-jun proto oncogene (JUN), clone hCJ-1" [5] M63582_at THYROLIBERIN PRECURSOR [6] U73377_at SKI V-ski avian sarcoma viral oncogene homolog [7] U80073_at GB DEF = Tip associating protein (TAP) mRNA [8] X07695_at KRT4 Keratin 4 [9] X83127_at "K+ channel beta 1a subunit mRNA, alternatively spliced" [10] M85289_at HSPG2 Heparan sulfate proteoglycan [11] X64624_s_at HOMEOBOX/POU DOMAIN PROTEIN RDC-1 [12] M19508_xpt3_s_at "MPO from Human myeloperoxidase gene, exons 1-4./ntype=DNA /annot=exon" [13] X14767_at "GABRB1 Gamma-aminobutyric acid (GABA) A receptor, beta 1" ------------------------------------------------------------ clusterID = 54 # of genes = 53 -------------------------- [1] D21089_at "XPC Xeroderma pigmentosum, complementation group C" [2] D83243_at "ATM Ataxia telangiectasia mutated (includes complementation groups A, C and D)" [3] D87438_at "KIAA0251 gene, partial cds" [4] J03798_at SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 [5] L29218_at Clk2 mRNA [6] M64174_at TYROSINE-PROTEIN KINASE JAK1 [7] M91592_at ZNF76 Zinc finger protein 76 [8] S75168_rna1_at "Matk=megakaryocyte-associated tyrosine kinase [human, Genomic, 2617 nt 13 segments]" [9] U09414_at ZNF137 Zinc finger protein 137 (clone pHZ-30) [10] U09848_at ZNF139 Zinc finger protein 139 (clone pHZ-37) [11] U15782_at "CSTF3 Cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kD" [12] U23028_at EIF2B Eukaryotic translation initiation factor 2B epsilon [13] U37139_at "Beta 3-endonexin mRNA, long form and short form" [14] U44839_at Putative ubiquitin C-terminal hydrolase (UHX1) mRNA [15] U50839_at "G16 protein (g16) mRNA, partial cds" [16] U51334_at Putative RNA binding protein (RBP56) mRNA [17] U60975_at Hybrid receptor gp250 precursor mRNA [18] U66618_at SWI/SNF complex 60 KDa subunit (BAF60b) mRNA [19] U69645_at Zinc finger protein mRNA [20] U70323_at "SCA2 Spinocerebellar ataxia 2 (olivopontocerebellar ataxia 2, autosomal dominant)" [21] U78521_at Immunophilin homolog ARA9 mRNA [22] U83246_at Copine I mRNA [23] U89336_cds6_at "Unknown gene extracted from Human HLA class III region containing NOTCH4 gene, partial sequence, homeobox PBX2 (HPBX) gene, receptor for advanced glycosylation end products (RAGE) gene, and 6 unidentified cds, complete sequence" [24] U93237_rna2_at MEN1 gene (menin) extracted from Human menin (MEN1) gene [25] X66079_at SPIB Spi-B transcription factor (Spi-1/PU.1 related) [26] X66397_at "RPL7A Neurotrophic tyrosine kinase, receptor, type 1" [27] X66867_cds1_at Max gene extracted from H.sapiens max gene [28] X75208_at HEK2 mRNA for protein tyrosine kinase receptor [29] X78817_at "KIAA0131 gene, partial cds" [30] X80199_at MLN51 mRNA [31] X92106_at Bleomycin hydrolase [32] X92715_at ZNF74 Zinc finger protein 74 (Cos52) [33] X94754_at Yeast methionyl-tRNA synthetase homologue [34] X99209_at TNNC2 Troponin C2 (fast skeletal) [35] Y10055_at GB DEF = Phosphoinositide 3-kinase [36] Y11251_at "GB DEF = Novel member of serine-arginine domain protein, SRrp129" [37] Z35102_at Ndr protein kinase [38] Z37166_at BAT1 mRNA for nuclear RNA helicase (DEAD family) [39] L04282_at CACCC box-binding protein mRNA [40] U34587_at CRHR2 Corticotropin releasing hormone receptor 2 [41] AC002045_xpt2_s_at "A-589H1.2 from Homo sapiens Chromosome 16 BAC clone CIT987-SKA-589H1 ~complete genomic sequence, complete sequence./ntype=DNA /annot=mRNA" [42] D12775_s_at AMPD3 Adenosine monophosphate deaminase (isoform E) [43] U38964_s_at GB DEF = PMS2 related (hPMSR2) gene [44] HG2238-HT2321_s_at "Nuclear Mitotic Apparatus Protein 1, Alt. Splice Form 2" [45] X04654_s_at SNRP70 U1 snRNP 70K protein [46] J03242_s_at IGF2 Insulin-like growth factor 2 (somatomedin A) [47] M13829_s_at PKS PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE [48] X65784_s_at "Cellular adhesion regulatory molecule [human, mRNA, 429 nt]" [49] U09820_s_at Helicase II (RAD54L) mRNA [50] U45448_s_at P2x1 receptor mRNA [51] U90552_s_at Butyrophilin (BTF5) mRNA [52] X90530_at GB DEF = RagB protein [53] D38437_f_at "PMS8 mRNA (yeast mismatch repair gene PMS1 homologue), partial cds (C-terminal region)" ------------------------------------------------------------ clusterID = 55 # of genes = 24 -------------------------- [1] AF010193_at MAD-related gene SMAD7 (SMAD7) mRNA [2] D11428_at PMP22 Peripheral myelin protein 22 [3] D21260_at 60S RIBOSOMAL PROTEIN L23 [4] D63476_at KIAA0142 gene [5] D86961_at "KIAA0206 gene, partial cds" [6] D87074_at KIAA0237 gene [7] L14837_at TJP1 Tight junction protein 1 (zona occludens 1) [8] M21574_at "PDGFRA Platelet-derived growth factor receptor, alpha polypeptide" [9] M24899_at "THRA Thyroid hormone receptor, alpha (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog)" [10] M64590_at GLDC Glycine cleavage system protein P (glycine decarboxylase) [11] M94633_at "GB DEF = Recombination acitivating protein (RAG2) gene, last exon" [12] U22526_at "2,3-oxidosqualene-lanosterol cyclase mRNA" [13] U28368_at "ID4 Inhibitor of DNA binding 4, dominant negative helix-loop-helix protein" [14] U31099_at "GB DEF = DP prostanoid receptor (PTGDR) mRNA, partial cds" [15] U31384_at G protein gamma-11 subunit mRNA [16] U57911_at "Fetal brain (239FB) mRNA, from the WAGR region" [17] U81607_at GRAVIN [18] X02874_at OIAS (2'-5') oligoadenylate synthetase [19] X53586_rna1_at Integrin alpha 6 (or alpha E) protein gene extracted from Human mRNA for integrin alpha 6 [20] HG3543-HT3739_at Insulin-Like Growth Factor 2 [21] U31556_at "E2F5 E2F transcription factor 5, p130-binding" [22] Y00264_at APP Amyloid A4 protein of Alzheimer's disease [23] HG3638-HT3849_s_at "Amyloid Beta (A4) Precursor Protein, Alt. Splice 2, A4(751)" [24] M29277_s_at CELL SURFACE GLYCOPROTEIN MUC18 PRECURSOR ------------------------------------------------------------ clusterID = 56 # of genes = 22 -------------------------- [1] AFFX-BioDn-3_at AFFX-BioDn-3_at (endogenous control) [2] D45370_at ApM2 mRNA for GS2374 (unknown product specific to adipose tissue) [3] D63487_at "KIAA0153 gene, partial cds" [4] D86479_at "Non-lens beta gamma-crystallin like protein (AIM1) mRNA, partial cds" [5] HG25930-HT26386_at Estradiol 17-beta dehydrogenase 1 [6] HG3570-HT3773_at Protein Phosphatase Inhibitor Homolog [7] HG4068-HT4338_at Phosphoprotein Tal2 [8] L02867_at "62 kDa paraneoplastic antigen mRNA, 3' end" [9] L33243_at PKD1 Polycystic kidney disease protein 1 [10] L42354_at GB DEF = (clone 48ES4) mRNA fragment [11] L42451_at Pyruvate dehydrogenase kinase isoenzyme 2 (PDK2) mRNA [12] U03270_at GB DEF = Centrin mRNA [13] U14910_at RPE-retinal G protein-coupled receptor (rgr) mRNA [14] U17327_at NOS1 Nitric oxide synthase 1 (neuronal) [15] X76059_at YRRM1 [16] Y10260_at GB DEF = EYA1A gene [17] Z97074_at Rab9 effector p40 [18] X59842_rna1_s_at PBX2 mRNA [19] Y10375_s_at SHPS-1 [20] M96233_s_at GSTM4 Glutathione S-transferase M4 [21] M10942_at Metallothionein-Ie gene (hMT-Ie) [22] X16105_at RD Radin blood group ------------------------------------------------------------ clusterID = 57 # of genes = 18 -------------------------- [1] D82346_at HNSPC [2] D83657_at Calcium-binding protein in amniotic fluid 1 [3] J05070_at MMP2 Matrix metalloproteinase 2 (gelatinase A; collagenase type IV) [4] J05556_at MMP8 Matrix metalloproteinase 8 (neutrophil collagenase) [5] L20591_at ANX3 Annexin III (lipocortin III) [6] L77566_at "DGS-I mRNA, 3' end" [7] M21005_at CALGRANULIN A [8] M26602_at "DEFA1 Defensin, alpha 1, myeloid-related sequence " [9] U64197_at CC chemokine LARC precursor [10] X53961_at LTF Lactotransferrin [11] X56677_at MYOD1 Myogenic factor 3 [12] Z38026_at CAP-18 protein [13] X57110_s_at CBL Cas-Br-M (murine) ecotropic retroviral transforming sequence [14] M69197_xpt2_s_at HPR from Human haptoglobin and haptoglobin-related protein (HP and HPR) genes./ntype=DNA /annot=mRNA [15] M26311_s_at GB DEF = Cystic fibrosis antigen mRNA [16] S75256_s_at "GB DEF = HNL=neutrophil lipocalin [human, ovarian cancer cell line OC6, mRNA Partial, 534 nt]" [17] M99435_at TRANSDUCIN-LIKE ENHANCER PROTEIN 1 [18] X99133_at NGAL gene ------------------------------------------------------------ clusterID = 58 # of genes = 94 -------------------------- [1] D10995_at GB DEF = Serotonin 1B receptor [2] D14889_at "Small GTP-binding protein, S10" [3] D17525_at CRARF C4/C2 activating component of Ra-reactive factor [4] D43949_at "KIAA0082 gene, partial cds" [5] D85527_at "GB DEF = LIM domain, partial cds" [6] D87442_at "KIAA0253 gene, partial cds" [7] HG2028-HT2082_at "Laminin, A Polypeptide" [8] HG2280-HT2376_at D-Amino-Acid Oxidase [9] HG2290-HT2386_at Calcitonin [10] HG2614-HT2710_at "Collagen, Type Viii, Alpha 1" [11] HG315-HT315_at "Beta-1-Glycoprotein 11, Pregnancy-Specific" [12] HG3994-HT4264_at "Cpg-Enriched Dna, Clone S16" [13] HG846-HT846_at Cyclophilin-Related Protein [14] J03930_at "ALKALINE PHOSPHATASE, INTESTINAL PRECURSOR" [15] L05779_at "EPHX2 Epoxide hydrolase 2, cytoplasmic" [16] L19314_at HRY gene [17] L20316_at GCGR Glucagon receptor [18] L20815_at S protein mRNA [19] L35475_at GB DEF = Olfactory receptor-like gene [20] L36922_at "GB DEF = Met-ase gene, exon 1" [21] L38935_at GT212 mRNA [22] L42621_at Ly-9 mRNA [23] M11726_at PPY Pancreatic polypeptide [24] M22490_at BMP4 Bone morphogenetic protein 4 [25] M26683_at "SCYA2 Small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je)" [26] M34182_at "CAMP-DEPENDENT PROTEIN KINASE, GAMMA-CATALYTIC SUBUNIT" [27] M34455_at "IDO Indole 2,3-dioxygenase" [28] M58378_cds1_at SYN1 gene (synapsin I) extracted from Human synapsin I (SYN1) gene [29] M92303_at "DIHYDROPRYRIDINE-SENSITIVE L-TYPE, CALCIUM CHANNEL BETA-1-B1 SUBUNIT" [30] M95549_at "SLC5A2 Solute carrier family 5 (sodium/glucose cotransporter), member 2" [31] S71824_at "NEURAL CELL ADHESION MOLECULE, PHOSPHATIDYLINOSITOL-LINKED ISOFORM PRECURSOR" [32] S82198_at Caldecrin [33] U03642_at G protein-coupled receptor APJ gene [34] U13666_at GB DEF = G protein-coupled receptor (GPR1) gene [35] U15172_at Nip1 (NIP1) mRNA [36] U16127_at "GRIK5 Glutamate receptor, ionotropic, kainate 5" [37] U17163_at Transcription factor ETV1 mRNA [38] U22963_at Class I histocompatibility antigen-like protein mRNA [39] U27831_at "GB DEF = Striatum-enriched phosphatase (STEP) mRNA, partial cds" [40] U29700_at GB DEF = Anti-mullerian hormone type II receptor precursor gene [41] U33839_at GB DEF = Potassium channel mRNA [42] U37219_at Cyclophilin-like protein CyP-60 mRNA [43] U40990_at "Putative voltage-gated potassium channel (KVLQT1) mRNA, partial cds" [44] U46194_at "Renal cell carcinoma antigen RAGE-4 mRNA, complete putative cds" [45] U47931_at GB DEF = G-protein beta-3 subunit alternatively spliced form mRNA sequence [46] U48437_at Amyloid precursor-like protein 1 mRNA [47] U48936_at "GB DEF = Amiloride-sensitive epithelial sodium channel gamma subunit mRNA, 5' end, partial cds" [48] U49250_at Putative cerebral cortex transcriptional regulator T-Brain-1 (Tbr-1) mRNA [49] U52112_rna1_at "L1CAM gene (neural cell adhesion molecule L1) extracted from Human Xq28 genomic DNA in the region of the L1CAM locus containing the genes for neural cell adhesion molecule L1 (L1CAM), arginine-vasopressin receptor (AVPR2), C1 p115 (C1), ARD1 N-acetyltransferase related protein (TE2), renin-binding protein (RbP), host cell factor 1 (HCF1), and interleukin-1 receptor-associated kinase (IRAK) genes, and Xq28lu2 gene" [50] U52112_rna5_at "RbP gene (renin-binding protein) extracted from Human Xq28 genomic DNA in the region of the L1CAM locus containing the genes for neural cell adhesion molecule L1 (L1CAM), arginine-vasopressin receptor (AVPR2), C1 p115 (C1), ARD1 N-acetyltransferase related protein (TE2), renin-binding protein (RbP), host cell factor 1 (HCF1), and interleukin-1 receptor-associated kinase (IRAK) genes, and Xq28lu2 gene" [51] U65402_at GB DEF = Seven transmembrane G-coupled receptor (GPR31) gene [52] U78798_at TNF receptor associated factor 6 (TRAF6) mRNA [53] U79266_at Clone 23627 mRNA [54] U79275_at "Clone 23947 mRNA, partial cds" [55] U92971_at Protease-activated receptor 3 (PAR3) mRNA [56] U96114_at Nedd-4-like ubiquitin-protein ligase WWP2 mRNA [57] X14789_at CRYAA Crystallin alpha-A [58] X66417_at KAPPA CASEIN PRECURSOR [59] X82895_at DLG2 Homolog 2 of Drosophila large discs [60] X85785_rna1_at DARC gene [61] X89267_at UROD Uroporphyrinogen decarboxylase [62] X98801_at Dynactin [63] Y08134_at GB DEF = ASM-like phosphodiesterase 3b [64] Y08263_at "AAD14 protein, partial" [65] Y10871_at GB DEF = Twist gene [66] Y13247_at Fb19 mRNA [67] Z15114_at "PRKCG Protein kinase C, gamma" [68] Z29481_at "3-HYDROXYANTHRANILATE 3,4-DIOXYGENASE" [69] Z48199_at SDC1 Syndecan 1 [70] J02986_cds1_at FGF4 gene (transforming protein) extracted from Human transforming protein (hst) gene [71] U27325_s_at TBXA2R Thromboxane A2 receptor [72] X86371_s_at "Tumour suppressor protein, HUGL" [73] X55019_s_at "CHRND Cholinergic receptor, nicotinic, delta polypeptide" [74] HG2868-HT3012_s_at "Xe7, Pseudoautosomal Gene, Alt. Splice 2" [75] L10615_s_at CSN2 Beta-casein [76] U80226_s_at "GB DEF = Gamma-aminobutyric acid transaminase mRNA, partial cds" [77] M16938_s_at "Homeo box c8 protein, mRNA" [78] X54667_s_at CST4 Cystatin S [79] M29932_s_at "ADRB3 Adrenergic, beta-3-, receptor" [80] X13461_s_at CALMODULIN-RELATED PROTEIN NB-1 [81] X80763_s_at HTR2C 5-hydroxytryptamine (serotonin) receptor 2C [82] M94172_s_at N-type calcium channel alpha-1 subunit mRNA [83] U16812_s_at Bak protein mRNA [84] U76366_s_at TCOF1 Treacher Collins syndrome susceptibility protein [85] U41767_s_at Metargidin precursor mRNA [86] U66828_s_at Carnitine palmitoyltransferase I (CPTI) mRNA [87] U70064_s_at "Lysosomal trafficking regulator (LYST) mRNA, partial cds" [88] Z49825_s_at HEPATOCYTE NUCLEAR FACTOR 4 [89] Z49105_at HD21 mRNA [90] L37112_at AVPR1B Arginine vasopressin receptor 1B [91] L42611_f_at "KERATIN, TYPE II CYTOSKELETAL 6D" [92] M37755_f_at PSG7 Pregnancy-specific beta 1-glycoprotein 7 [93] L41268_f_at Nkat2b mRNA [94] U58516_at Breast epithelial antigen BA46 mRNA ------------------------------------------------------------ clusterID = 59 # of genes = 75 -------------------------- [1] AB001325_at AQP3 Aquaporin 3 [2] AF002700_at RET ligand 2 (RETL2) mRNA [3] D63478_at KIAA0144 gene [4] D78129_at "GB DEF = Adult (34 year old) Male liver mRNA for squalene epoxidase, partial cds" [5] HG1602-HT1602_at Utrophin [6] HG2715-HT2811_at Tyrosine Kinase (Gb:Z25437) [7] HG363-HT363_at Epidermal Growth Factor Receptor-Related Protein [8] HG3740-HT4010_at "Basic Transcription Factor 2, 34 Kda Subunit" [9] L08187_at Cytokine receptor (EBI3) mRNA [10] L15702_at "BF B-factor, properdin" [11] L18983_at Tyrosine phosphatase (IA-2/PTP) mRNA [12] L47345_at "TCEB3 Transcription elongation factor B (SIII), polypeptide 3 (110kD, elongin A)" [13] L76380_at (clone HSNME29) CGRP type 1 receptor mRNA [14] L78440_at STAT4 Signal transducer and activator of transcription 4 [15] M11119_at GB DEF = Endogenous retrovirus envelope region mRNA (PL1) [16] M14764_at NGFR Nerve growth factor receptor [17] M59815_at C4A Complement component 4A [18] M90299_at "GCK Glucokinase (hexokinase 4, maturity onset diabetes of the young 2)" [19] M93283_at Pancreatic lipase related protein 1 (PLRP1) mRNA [20] M93405_at Methylmalonate semialdehyde dehydrogenase gene [21] S43646_at "KERATIN, TYPE II CYTOSKELETAL 2 EPIDERMAL" [22] S78296_at "Neurofilament-66 [human, fetal brain, mRNA, 3197 nt]" [23] S79639_at EXT1 Exostoses (multiple) 1 [24] U09410_at ZNF131 Zinc finger protein 131 (clone pHZ-10) [25] U20428_at SNC19 mRNA sequence [26] U24105_at Coatomer protein (COPA) mRNA [27] U31875_at Hep27 protein mRNA [28] U45982_at GB DEF = G protein-coupled receptor GPR-9-6 gene [29] U61166_at SH3 domain-containing protein SH3P17 mRNA [30] U66617_at "SWI/SNF complex 60 KDa subunit (BAF60a) mRNA, alternatively spliced" [31] U72066_at CtBP interacting protein CtIP (CtIP) mRNA [32] U72206_at Guanine nucleotide regulatory factor (LFP40) mRNA [33] U79252_at Clone 23679 mRNA [34] U79260_at Clone 23745 mRNA [35] U81375_at Placental equilibrative nucleoside transporter 1 (hENT1) mRNA [36] U87223_at Contactin associated protein (Caspr) mRNA [37] X13967_at LIF Leukemia inhibitory factor (cholinergic differentiation factor) [38] X15875_at CREB1 CAMP responsive element binding protein 1 [39] X62025_rna1_at "Rod cG-PDE G gene for 3', 5'-cyclic nucleotide phosphodiesterase" [40] X72308_at MONOCYTE CHEMOTACTIC PROTEIN 3 PRECURSOR [41] X78924_at GB DEF = HZF1 mRNA for zinc finger protein [42] X79439_at GB DEF = Notch 3 DNA sequence [43] X80590_at PHKG1 mRNA [44] X80923_at GB DEF = Nov gene [45] X91504_at TFCOUP2 Transcription factor COUP 2 (a.k.a. ARP1) [46] X99664_at "Protein containing SH3 domain, SH3GL3" [47] Y07683_at GB DEF = P2X3 purinoceptor [48] Y07829_xpt4_at Exon A2 from H.sapiens gene encoding RING finger protein./ntype=DNA /annot=exon [49] Y08302_at GB DEF = MAP kinase phosphatase 4 [50] Y08409_at GB DEF = Spot14 gene [51] Y09616_at Carboxylesterase (hCE-2) mRNA [52] Y10209_at GB DEF = CD30L protein [53] Y11306_rna1_at HTcf-4 gene extracted from H.sapiens mRNA for beta catenin/TCF-4 [54] Z31357_at "CDO1 Cysteine dioxygenase, type 1" [55] D31889_at "KIAA0072 gene, partial cds" [56] L04731_at Translocation T(4:11) of ALL-1 gene to chromosome 4 [57] L22454_at Nuclear respiratory factor-1 (NRF-1) mRNA [58] M18700_s_at ELASTASE IIIA PRECURSOR [59] D29675_s_at "GB DEF = Inducible nitric oxide synthase gene, promoter and exon 1" [60] U34380_rna1_s_at "TEC gene extracted from Human protein tyrosine kinase TEC (tec) gene, partial cds, and tyrosine kinase TXK (txk) gene" [61] D31840_s_at DRPLA Dentatorubral-pallidoluysian atrophy [62] HG1728-HT1734_s_at "Non-Specific Cross Reacting Antigen (Gb:D90277), Alt. Splice Form 2" [63] U35005_s_at STRESS-ACTIVATED PROTEIN KINASE JNK1 [64] X92518_s_at HMGI-C [65] U64315_s_at "XPF Xeroderma pigmentosum, complementation group F" [66] M20747_s_at "SLC2A4 Solute carrier family 2 (facilitated glucose transporter), member 4" [67] M29994_s_at "GB DEF = Alpha-I spectrin gene, exon 12" [68] U12707_s_at WAS Wiskott-Aldrich syndrome (ecezema-thrombocytopenia) [69] U19252_s_at GT334 protein (GT334) gene mRNA [70] U25034_s_at Neuronatin alpha mRNA [71] U57623_s_at "FATTY ACID-BINDING PROTEIN, HEART" [72] U79528_s_at Sigma receptor mRNA [73] X66894_s_at FACC Fanconi anemia complementation group C [74] M21388_r_at "GB DEF = Unproductively rearranged Ig mu-chain mRNA V-region (VD), 5' end, clone mu-3A1A" [75] U49441_at "GB DEF = Mitochondrial trifunctional protein beta subunit mRNA, partial cds" ------------------------------------------------------------ clusterID = 60 # of genes = 52 -------------------------- [1] AF007875_at "Dolichol monophosphate mannose synthase (DPM1) mRNA, partial cds" [2] D00762_at PROTEASOME COMPONENT C8 [3] D13315_at GLO1 Glyoxalase I [4] D13627_at KIAA0002 gene [5] D14662_at KIAA0106 gene [6] D14812_at KIAA0026 gene [7] D16294_at 3-KETOACYL-COA THIOLASE MITOCHONDRIAL [8] D50926_at "KIAA0136 gene, partial cds" [9] D50927_at KIAA0137 gene [10] D84294_at TPRD [11] D86549_at "P97 homologous protein, partial cds" [12] D87743_at "KIAA0267 gene, partial cds" [13] D90084_at PDHA1 Pyruvate dehydrogenase (lipoamide) alpha 1 [14] HG1862-HT1897_at Calmodulin Type I [15] L18960_at EIF4C Eukaryotic translation initiation factor 4C (eIF-4C) [16] L38810_at Thyroid receptor interactor (TRIP1) mRNA [17] L40357_at "Thyroid receptor interactor (TRIP7) mRNA, 3' end of cds" [18] M14219_at DCN Decorin [19] M31642_at HPRT1 Hypoxanthine phosphoribosyltransferase 1 (Lesch-Nyhan syndrome) [20] M34677_at FACTOR VIII INTRON 22 PROTEIN [21] M37104_at "ATP5 ATP synthase, H+ transporting, mitochondrial" [22] M81118_at ADH5 Alcohol dehydrogenase 5 chi subunit (class III) [23] M81601_at TRANSCRIPTION ELONGATION FACTOR S-II [24] M94856_at "FATTY ACID-BINDING PROTEIN, EPIDERMAL" [25] S50223_at HKR-T1 [26] S85655_at PHB Prohibitin [27] U01923_at BTK region clone ftp-3 mRNA [28] U25182_at Antioxidant enzyme AOE37-2 mRNA [29] U53003_at KNP-Ia [30] U56833_at "VHL binding protein-1 (VBP-1) mRNA, partial cds" [31] U68018_at Mad protein homolog (hMAD-2) mRNA [32] U75679_at Histone stem-loop binding protein (SLBP) mRNA [33] U90549_at Non-histone chromosomal protein (NHC) mRNA [34] X02317_at SOD1 Superoxide dismutase 1 (Cu/Zn) [35] X15183_at 60S RIBOSOMAL PROTEIN L13 [36] X52882_at "T-COMPLEX PROTEIN 1, ALPHA SUBUNIT" [37] X64229_at DEK PROTEIN [38] X72841_at Retinoblastoma-binding protein (RbAp46) mRNA [39] X72964_at CALT Caltractin (20kD calcium-binding protein) [40] X76057_at MPI Mannose phosphate isomerase [41] X83218_at "ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein)" [42] X92396_at Novel gene in Xq28 region [43] X92896_at ITBA2 protein [44] Z14244_at COX7B Cytochrome c oxidase subunit VIIb [45] Z22551_at Kinectin gene [46] Z49099_at Spermine synthase [47] Z97054_xpt2_at "DNA binding protein from Human DNA sequence from PAC 339A18 on chromosome Xp11.1-Xp11.4. Contains KIAA0178 gene, similar to mitosis-specific chromosome segregation protein SMC1 of S.cerevisiae, DNA binding protein similar to URE-B1, ESTs and STS./ntype=DNA /annot=CDS" [48] D00860_at PRPS1 Phosphoribosyl pyrophosphate synthetase subunit I [49] J02683_s_at ANT2 Adenine nucleotide translocator 2 (fibroblast) [50] U06155_at GB DEF = Chromosome 1q subtelomeric sequence D1S553 [51] U44103_at GB DEF = Small GTP binding protein Rab9 mRNA [52] X98296_at Ubiquitin hydrolase ------------------------------------------------------------ clusterID = 61 # of genes = 25 -------------------------- [1] D30755_at VIM Vimentin [2] L22075_at Guanine nucleotide regulatory protein (G13) mRNA [3] M13955_at "Mesothelial keratin K7 (type II) mRNA, 3' end" [4] M16038_at LYN V-yes-1 Yamaguchi sarcoma viral related oncogene homolog [5] M58603_at NFKB1 Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) [6] M63379_at CLU Clusterin (complement lysis inhibitor; testosterone-repressed prostate message 2; apolipoprotein J) [7] M80254_at "PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, MITOCHONDRIAL PRECURSOR" [8] M83221_at TRANSCRIPTION FACTOR RELB [9] U46751_at Phosphotyrosine independent ligand p62 for the Lck SH2 domain mRNA [10] U57592_at GB DEF = Jumonji putative protein (jumonji) mRNA [11] U68019_at Mad protein homolog (hMAD-3) mRNA [12] U77968_at "MOP5 mRNA, partial cds" [13] U81554_at CaM kinase II isoform mRNA [14] X63417_at GB DEF = IrlB mRNA [15] X75042_at REL V-rel avian reticuloendotheliosis viral oncogene homolog [16] X78925_at ZNF2 Zinc finger protein 2 (A1-5) [17] X82207_at BETA-CENTRACTIN [18] S76638_at NFKB2 Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [19] D79206_s_at "SDC4 Syndecan 4 (amphiglycan, ryudocan)" [20] HG2981-HT3127_s_at "Epican, Alt. Splice 11" [21] U09937_rna1_s_at Urokinase-type plasminogen activator receptor gene extracted from Human urokinase-type plasminogen receptor [22] M28130_rna1_s_at Interleukin 8 (IL8) gene [23] Y00787_s_at INTERLEUKIN-8 PRECURSOR [24] M57731_s_at GRO2 GRO2 oncogene [25] X53800_s_at GRO3 GRO3 oncogene ------------------------------------------------------------ clusterID = 62 # of genes = 13 -------------------------- [1] HG3231-HT3408_at "Protease Receptor-1, Effector Cell" [2] U40714_at GB DEF = Tyrosyl-tRNA synthetase mRNA [3] X17254_at GATA1 Transcription factor Eryf1 [4] X64044_at SPLICING FACTOR U2AF 65 KD SUBUNIT [5] X98260_at "M-phase phosphoprotein, mpp11" [6] Z47087_at "TCEB1L Transcription elongation factor B (SIII), polypeptide 1-like " [7] X52213_s_at GB DEF = Ltk mRNA [8] D26535_s_at DLST Dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) [9] HG3725-HT3981_s_at Insulin-Like Leydig Hormone [10] HG3925-HT4195_s_at Surfacant Protein Sp-A2 Delta [11] M13690_s_at "C1NH Complement component 1 inhibitor (angioedema, hereditary)" [12] K03207_f_at PRH1 Proline-rich protein HaeIII subfamily 1 [13] D64015_at TIAL1 TIA1 cytotoxic granule-associated RNA-binding protein-like 1 ------------------------------------------------------------ clusterID = 63 # of genes = 35 -------------------------- [1] D14694_at PHOSPHATIDYLSERINE SYNTHASE I [2] D63506_at Unc-18homologue [3] D78611_at MEST Mesoderm specific transcript (mouse) homolog [4] M14636_at PYGL Glycogen phosphorylase L (liver form) [5] M25280_at SELL Selectin L (lymphocyte adhesion molecule 1) [6] S77763_at NF-E2 protein (NF-E2) mRNA [7] U11732_at ETV6 Ets variant gene 6 (TEL oncogene) [8] U11877_at "GB DEF = Interleukin-8 receptor type B (IL8RB) mRNA, splice variant IL8RB9, partial cds" [9] U14193_at TFIIA gamma subunit mRNA [10] U48861_at "CHRNB4 Cholinergic receptor, nicotinic, beta polypeptide 4" [11] U71364_at Cytoplasmic antiproteinase 3 (CAP3) mRNA [12] U72621_at LOT1 mRNA [13] U79725_at A33 antigen precursor mRNA [14] U90916_at Clone 23815 mRNA sequence [15] X52947_at GJA1 Cardiac gap junction protein [16] X57206_at "ITPKB Inositol 1,4,5-trisphosphate 3-kinase B" [17] X66503_at Adenylosuccinate synthetase mRNA [18] X66533_at "GUANYLATE CYCLASE SOLUBLE, BETA-1 CHAIN" [19] X70394_at OZF mRNA [20] X74837_at HUMM9 mRNA [21] X96586_at FAN protein [22] Z46376_rna1_at HK2 mRNA for hexokinase II [23] Z50022_at Surface glycoprotein [24] S68805_at "L-arginine:glycine amidinotransferase [human, kidney carcinoma cells, mRNA, 2330 nt]" [25] U16307_at Glioma pathogenesis-related protein (GliPR) mRNA [26] X16323_at HGF Hepatocyte growth factor (hepapoietin A; scatter factor) [27] U52191_s_at SMCY (H-Y) mRNA [28] HG1827-HT1856_s_at "Cytochrome P450, Subfamily Iic, Alt. Splice Form 2" [29] X06182_s_at KIT V-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [30] J04430_s_at "ACP5 Acid phosphatase 5, tartrate resistant" [31] U16799_s_at "Na,K-ATPase beta-1 subunit mRNA" [32] M58286_s_at TNFR1 Tumor necrosis factor receptor 1 (55kD) [33] X51362_s_at DRD2 Dopamine D2 receptor [34] S79873_s_at LAMP2 Lysosome-associated membrane protein 2 {alternative products} [35] X91911_s_at Glioma pathogenesis-related protein (GliPR) mRNA ------------------------------------------------------------ clusterID = 64 # of genes = 37 -------------------------- [1] AFFX-HUMGAPDH/M33197_5_at AFFX-HUMGAPDH/M33197_5_at (endogenous control) [2] AFFX-HUMGAPDH/M33197_M_at AFFX-HUMGAPDH/M33197_M_at (endogenous control) [3] AFFX-HSAC07/X00351_M_at AFFX-HSAC07/X00351_M_at (endogenous control) [4] AFFX-HUMGAPDH/M33197_M_st AFFX-HUMGAPDH/M33197_M_st (endogenous control) [5] AFFX-HUMGAPDH/M33197_3_st AFFX-HUMGAPDH/M33197_3_st (endogenous control) [6] D38548_at KIAA0076 gene [7] HG2463-HT2559_at Guanine Nucleotide-Binding Protein G25k [8] J03592_at ANT3 Adenine nucleotide translocator 3 (liver) [9] M13934_cds2_at RPS14 gene (ribosomal protein S14) extracted from Human ribosomal protein S14 gene [10] M25809_at "ATP6B1 ATPase, H+ transporting, lysosomal (vacuolar proton pump), beta polypeptide, 56/58kD, isoform 1" [11] S67070_at "Heat shock protein HSP72 homolog [human, thyroid associated ophthalmopathy patient, mRNA Partial, 450 nt]" [12] U10991_at "G2 protein mRNA, partial cds" [13] U14971_at RPS9 Ribosomal protein S9 [14] U18018_at "ETV4 Ets variant gene 4 (E1A enhancer-binding protein, E1AF)" [15] U45973_at "Phosphatidylinositol (4,5)bisphosphate 5-phosphatase homolog mRNA, partial cds" [16] U58682_at RPS28 Ribosomal protein S28 [17] U68233_at Farnesol receptor HRR-1 (HRR-1) mRNA [18] X52966_at RPL35A Ribosomal protein L35a [19] X66839_at MaTu MN mRNA for p54/58N protein [20] X70991_at MADER mRNA [21] X79781_at GB DEF = Ray mRNA [22] X82434_at EMD Emerin (Emery-Dreifuss muscular dystrophy) [23] X83573_at ARSE mRNA [24] L21998_at "MUC2 Mucin 2, intestinal/tracheal" [25] U43901_rna1_s_at 37 kD laminin receptor precursor/p40 ribosome associated protein gene [26] J04046_s_at CALMODULIN [27] X03689_s_at GB DEF = mRNA fragment for elongation factor TU (N-terminus) [28] K02777_s_at GB DEF = T-cell receptor active alpha-chain mRNA from Jurkat cell line [29] M14483_rna1_s_at PTMA gene extracted from Human prothymosin alpha mRNA [30] U06155_s_at GB DEF = Chromosome 1q subtelomeric sequence D1S553 [31] Z49148_s_at Enhancer of rudimentary homolog mRNA [32] U83598_at "Death domain receptor 3 soluble form (DDR3) mRNA, partial cds" [33] S82297_at BETA-2-MICROGLOBULIN PRECURSOR [34] X69654_at RPS26 Ribosomal protein S26 [35] Z30643_at GB DEF = Chloride channel (putative) 2139bp [36] V01516_f_at "KERATIN, TYPE II CYTOSKELETAL 6D" [37] X01677_f_at GAPD Glyceraldehyde-3-phosphate dehydrogenase ------------------------------------------------------------ clusterID = 65 # of genes = 52 -------------------------- [1] D86966_at KIAA0211 gene [2] HG3936-HT4206_at Interleukin 9 Receptor (Gb:S71404) [3] HG3995-HT4265_at "Cpg-Enriched Dna, Clone S19" [4] HG830-HT830_at Potassium Channel (Gb:L02750) [5] J03069_rna1_at MYCL2 gene [6] J04599_at BGN Biglycan [7] L00635_at "FNTB Farnesyltransferase, CAAX box, beta" [8] L03785_at "MYL5 Myosin, light polypeptide 5, regulatory" [9] L13923_at FBN1 Fibrillin 1 (Marfan syndrome) [10] L14754_at IGHMBP2 DNA-binding protein (SMBP2) [11] L19267_at "59 protein mRNA, 3' end" [12] M29960_at Steroid receptor (TR2-11) mRNA [13] M37435_at CSF1 Colony-stimulating factor 1 (M-CSF) [14] M60091_at GALT Galactose-1-phosphate uridyl transferase [15] M90366_at Zona pellucida glycoprotein 2 (ZP2) mRNA [16] M91083_at DNA-binding protein (HRC1) mRNA [17] M96980_at MYELIN TRANSCRIPTION FACTOR 1 [18] S68616_at "SLC9A1 Solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive)" [19] U01824_at Glutamate transporter [20] U09477_at "Clone 53BP1 p53-binding protein mRNA, partial cds" [21] U11037_at Sel-1 like mRNA [22] U18937_at Histidyl-tRNA synthetase homolog (HO3) mRNA [23] U34962_at Transcription factor HCSX (hCsx) mRNA [24] U39400_at NOF1 mRNA [25] U48405_at GB DEF = G protein coupled receptor OGR1 gene [26] U49082_at Transporter protein (g17) mRNA [27] U49089_at Neuroendocrine-dlg (NE-dlg) mRNA [28] U50535_at "BRCA2 region, mRNA sequence CG005" [29] U79259_at Clone 23945 mRNA [30] U82169_at Frizzled homolog (FZD3) mRNA [31] U88629_at GB DEF = RNA polymerase II elongation factor ELL2 [32] X12794_at GB DEF = V-erbA related ear-2 gene [33] X16416_at ABL1 V-abl Abelson murine leukemia viral oncogene homolog 1 [34] X76132_at DCC Deleted in colorectal carcinoma [35] X79865_at Mrp17 mRNA [36] X83425_at LU gene for Lutheran blood group glycoprotein [37] X99101_at ESR Estrogen receptor [38] X99459_at Sigma 3B protein [39] Z21488_at CNTN1 Contactin 1 [40] Z36715_at GB DEF = Net transcription factor [41] L20965_at Phosphodiesterase mRNA [42] X66785_at DBT Dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex) [43] HG2348-HT2444_s_at Peptide Yy [44] HG371-HT26388_s_at "Mucin 1, Epithelial, Alt. Splice 9" [45] L46720_s_at Phosphodiesterase I alpha [46] U45878_s_at Inhibitor of apoptosis protein 1 mRNA [47] X83705_s_at GB DEF = C-sis proto-oncogene [48] U52696_s_at "GB DEF = Adrenal Creb-rp homolog (Creb-rp), and tenascin-X (XB), partial cds, mRNA" [49] Y08265_s_at "DAN26 protein, partial" [50] L11672_at "ZNF91 Zinc finger protein 91 (HPF7, HTF10)" [51] L11672_r_at "ZNF91 Zinc finger protein 91 (HPF7, HTF10)" [52] M92642_at COL16A1 Alpha-1 type XVI collagen ------------------------------------------------------------ clusterID = 66 # of genes = 39 -------------------------- [1] AF015913_at GB DEF = SKB1Hs mRNA [2] D13988_at Rab GDI mRNA [3] D14878_at Protein D123 [4] D21255_at CDH11 Cadherin 11 (OB-cadherin) [5] D25328_at "PFKP Phosphofructokinase, platelet" [6] D28364_at "GB DEF = Annexin II, 5'UTR (sequence from the 5'cap to the start codon)" [7] D28589_at "GB DEF = mRNA (KIAA00167), partial sequence" [8] D43950_at "T-COMPLEX PROTEIN 1, EPSILON SUBUNIT" [9] D50916_at KIAA0126 gene [10] D78586_at CAD PROTEIN [11] HG511-HT511_at Ras Inhibitor Inf [12] J04444_at CYC1 Cytochrome c-1 [13] L29008_at SORD Sorbitol dehydrogenase [14] M34181_at "PRKACB Protein kinase, cAMP-dependent, catalytic, beta" [15] S76617_at BLK Protein-tyrosine kinase blk [16] U07550_at HSPE1 Heat shock 10 kD protein 1 (chaperonin 10) [17] U10324_at Nuclear factor NF90 mRNA [18] U16031_at Transcription factor IL-4 Stat mRNA [19] U21551_at GB DEF = ECA39 mRNA [20] U24169_at JTV-1 (JTV-1) mRNA [21] U59309_at FH Fumarate hydratase [22] U65928_at JUN V-jun avian sarcoma virus 17 oncogene homolog [23] U66838_at Cyclin A1 mRNA [24] U83843_at "GB DEF = HIV-1 Nef interacting protein (Nip7-1) mRNA, partial cds" [25] U86602_at Nucleolar protein p40 mRNA [26] U91985_at DNA fragmentation factor-45 mRNA [27] X06323_at MITOCHONDRIAL 60S RIBOSOMAL PROTEIN L3 [28] X53793_at MULTIFUNCTIONAL PROTEIN ADE2 [29] X54326_at MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE [30] X68836_at S-ADENOSYLMETHIONINE SYNTHETASE GAMMA FORM [31] X70649_at Cl.1042 mRNA of DEAD box protein family [32] X74801_at "T-COMPLEX PROTEIN 1, GAMMA SUBUNIT" [33] X84709_at Mediator of receptor-induced toxicity [34] X89576_at Putative MT4-MMP protein [35] L00058_at MYC V-myc avian myelocytomatosis viral oncogene homolog [36] D29640_s_at Ras GTPase-activating-like protein (IQGAP1) mRNA [37] HG3523-HT4899_s_at "Proto-Oncogene C-Myc, Alt. Splice 3, Orf 114" [38] M13929_s_at MYC V-myc avian myelocytomatosis viral oncogene homolog [39] U84388_at Death domain containing protein CRADD mRNA ------------------------------------------------------------ clusterID = 67 # of genes = 45 -------------------------- [1] D10523_at OGDH Oxoglutarate dehydrogenase (lipoamide) [2] D21261_at SM22-ALPHA HOMOLOG [3] D29963_at Platelet-endothelial tetraspan antigen 3 mRNA [4] D30758_at KIAA0050 gene [5] D86964_at "KIAA0209 gene, partial cds" [6] K03008_cds2_at Gamma-G2-psi gene extracted from Human gamma-C-crystallin (gamma-3) gene [7] M23197_at CD33 CD33 antigen (differentiation antigen) [8] M58285_at Membrane-associated protein (HEM-1) mRNA [9] M74491_at ARF3 ADP-ribosylation factor 3 [10] M76378_at FN1 Fibronectin 1 [11] M82809_at ANX4 Annexin IV (placental anticoagulant protein II) [12] S82470_at BB1 [13] U02570_at "CDC42 GTPase-activating protein mRNA, partial cds" [14] U14588_at Paxillin mRNA [15] U20657_at Ubiquitin protease (Unph) proto-oncogene mRNA [16] U29656_at "NME1 Non-metastatic cells 1, protein (NM23A) expressed in" [17] U33053_at Lipid-activated protein kinase PRK1 mRNA [18] U41635_at OS-9 precurosor mRNA [19] U43077_at CDC37 homolog mRNA [20] U59878_at "Low-Mr GTP-binding protein (RAB32) mRNA, partial cds" [21] U60325_at POLG DNA polymerase gamma [22] U64105_at "Guanine nucleotide exchange factor p115-RhoGEF mRNA, partial cds" [23] U65785_at 150 kDa oxygen-regulated protein ORP150 mRNA [24] U79265_at Clone 23614 mRNA sequence [25] U89336_cds1_at "Unknown gene extracted from Human HLA class III region containing NOTCH4 gene, partial sequence, homeobox PBX2 (HPBX) gene, receptor for advanced glycosylation end products (RAGE) gene, and 6 unidentified cds, complete sequence" [26] U94592_at Uncoupling protein homolog (UCPH) mRNA [27] X04366_at "CALPAIN 1, LARGE" [28] X06272_at SRPR Signal recognition particle receptor ('docking protein') [29] X54637_at TYK2 Protein-tyrosine kinase tyk2 (non-receptor) [30] X62055_at "PTPN6 Protein tyrosine phosphatase, non-receptor type 6" [31] X66365_at CDK6 Cyclin-dependent kinase 6 [32] X69550_at Rho GDP-dissociation Inhibitor 1 [33] M94046_at Zinc finger protein (MAZ) mRNA [34] U17838_at Zinc finger protein RIZ mRNA [35] U37146_at Silencing mediator of retinoid and thyroid hormone action (SMRT) mRNA [36] U53204_at Plectin (PLEC1) mRNA [37] D43682_s_at Very-long-chain acyl-CoA dehydrogenase (VLCAD) [38] X55448_cds1_s_at G6PD gene (glucose-6-phosphate dehydrogenase) extracted from H.sapiens G6PD gene for glucose-6-phosphate dehydrogenase [39] HG274-HT274_s_at Gamma-Glutamyltransferase 1 (Gb:J04131) [40] HG3107-HT3283_s_at Plasma Membrane Calcium Pump Hpmca2a [41] M20867_s_at GLUD1 Glutamate dehydrogenase [42] Z19554_s_at VIM Vimentin [43] M38449_s_at "Transforming growth factor-beta mRNA, clone pTGF-beta-trp114" [44] S57132_s_at COL16A1 Alpha-1 type XVI collagen [45] J03071_cds3_f_at "Chorionic somatomammotropin CS-1 gene extracted from Human growth hormone (GH-1 and GH-2) and chorionic somatomammotropin (CS-1, CS-2 and CS-5) genes" ------------------------------------------------------------ clusterID = 68 # of genes = 25 -------------------------- [1] D49818_at "Fructose 6-phosphate,2-kinase/fructose 2,6-bisphosphatase, partial cds" [2] D50495_at "Transcription elongation factor S-II, hS-II-T1" [3] HG2602-HT2698_at "Succinate Dehydrogenase, Flavoprotein Subunit" [4] HG3987-HT4257_at "Cpg-Enriched Dna, Clone E06" [5] K03021_at "PLAT Plasminogen activator, tissue type (t-PA)" [6] L16991_at DTYMK Deoxythymidylate kinase [7] L35269_at ZINC FINGER PROTEIN 35 [8] L76702_at "Protein phosphatase 2A 74 kDa regulatory subunit (delta or B"" subunit)" [9] M35531_at "FUT1 Fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, Bombay phenotype included)" [10] M59829_at GB DEF = MHC class III HSP70-HOM gene (HLA) [11] S61953_at ERBB3 V-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 {alternative products} [12] U72507_at 40871 mRNA partial sequence [13] U83303_cds2_at "GCP-2 gene (granulocyte chemotactic protein-2) extracted from Human line-1 reverse transcriptase gene, partial cds, and granulocyte chemotactic protein-2 (GCP-2) gene" [14] X63755_at High-sulphur keratin [15] X68487_at ADORA2B Adenosine A2b receptor [16] X79067_at ERF-1 mRNA 3' end [17] X93921_at Protein-tyrosine-phosphatase (tissue type: testis) [18] Y13620_at GB DEF = BCL9 gene [19] D00408_s_at CYP3A7 Cytochrome P450 IIIA7 (P450-HFLa) [20] D86043_s_at SHPS-1 [21] X95097_rna1_s_at VIP2 receptor [22] M17236_at "HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(2) ALPHA CHAIN PRECURSOR" [23] X84213_s_at Bak protein mRNA [24] X80878_at GB DEF = R kappa B mRNA [25] K03183_f_at Chorionic gonadotropin beta subunit gene ------------------------------------------------------------ clusterID = 69 # of genes = 22 -------------------------- [1] D87462_at "KIAA0272 gene, partial cds" [2] M14058_at C1R Complement component C1r [3] U09117_at Phospholipase c delta 1 mRNA [4] U34038_at Proteinase-activated receptor-2 mRNA [5] U38268_at "GB DEF = Cytochrome b pseudogene, partial cds" [6] U43519_at DRP2 Dystrophin related protein 2 [7] U52518_at Grb2-related adaptor protein (Grap) mRNA [8] X13839_at LCAT Lecithin-cholesterol acyltransferase [9] X52638_at "PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1" [10] X74295_at "ITGA7 Integrin, alpha 7B" [11] Z24680_at Garp gene mRNA [12] Z49155_at HD Huntingtin (Huntington disease) [13] X68688_rna1_s_at ZNF33B gene [14] X52896_s_at GB DEF = RNA for dermal fibroblast elastin [15] L44140_cds4_s_at DNL1L gene extracted from Homo sapiens chromosome X region from filamin (FLN) gene to glucose-6-phosphate dehydrogenase (G6PD) gene's [16] M86933_s_at AMELY Amelogenin (chromosome Y encoded) [17] M80397_s_at "POLD1 Polymerase (DNA directed), delta 1, catalytic subunit (125kD)" [18] U33052_s_at "Lipid-activated, protein kinase PRK2 mRNA" [19] U02566_s_at TYRO3 Receptor protein-tyrosine kinase sky [20] HG3033-HT3194_r_at Spliceosomal Protein Sap 62 [21] X94563_xpt2_r_at Exon 1b; used only in type 2 transcripts from H.sapiens dbi/acbp gene exon 1 & 2./ntype=DNA /annot=exon [22] AF001359_f_at "GB DEF = DNA mismatch repair protein (hMLH1) mRNA, alternatively spliced, partial cds" ------------------------------------------------------------ clusterID = 70 # of genes = 21 -------------------------- [1] D14664_at KIAA0022 gene [2] D25274_at Randomly sequenced mRNA [3] D26129_at RNS1 Ribonuclease A (pancreatic) [4] D43638_at ETO mRNA [5] D49396_at Apo1_Human (MER5(Aop1-Mouse)-like protein) [6] J03040_at SPARC SPARC/osteonectin [7] J03459_at LTA4H Leukotriene A4 hydrolase [8] L01664_at CLC Charot-Leyden crystal protein [9] L11369_at "Protocadherin 42 mRNA, 3' end of cds for alternative splicing PC42-8" [10] L37882_at Frizzled gene product mRNA [11] L38961_at ITM1 Integral transmembrane protein 1 [12] M34423_at GLB1 Beta-D-galactosidase [13] U42408_at Ladinin (LAD) mRNA [14] U57094_at Small GTP-binding protein mRNA [15] U65011_at Preferentially expressed antigen of melanoma (PRAME) mRNA [16] X97065_at "Sec23B isoform, 2450bp" [17] X99076_rna1_at "NRGN gene, exons 2,3 & 4 (joined CDS)" [18] Y11651_at GB DEF = Phosphate cyclase [19] U67615_at Beige protein homolog (chs) mRNA [20] L09209_s_at APLP2 Amyloid beta (A4) precursor-like protein 2 [21] U82979_at GB DEF = Immunoglobulin-like transcript-3 mRNA ------------------------------------------------------------ clusterID = 71 # of genes = 92 -------------------------- [1] AFFX-M27830_3_at AFFX-M27830_3_at (endogenous control) [2] AB002382_at KIAA0384 gene [3] AF015910_at "GB DEF = Unknown protein mRNA, partial cds" [4] D25248_at Randomly sequenced mRNA [5] D28114_at MOBP Myelin-associated oligodendrocytic basic protein [6] D38535_at PK-120 [7] D63877_at "KIAA0241 gene, partial cds" [8] D83542_at Cadherin-15 [9] D85245_at TR3beta [10] D87023_cds2_at J1 gene extracted from Human (lambda) DNA for immunoglobin light chain [11] D87073_at KIAA0236 gene [12] D87435_at ARF3 ADP-ribosylation factor 3 [13] J03278_at "PDGFRB Platelet-derived growth factor receptor, beta polypeptide" [14] L16862_at GPRK6 G protein-coupled receptor kinase 6 [15] L24559_at POLA DNA polymerase alpha subunit [16] L31801_at "SLC16A1 Solute carrier family 16 (monocarboxylic acid transporters), member 1" [17] L36531_at "GB DEF = Integrin alpha 8 subunit mRNA, 3' end" [18] L37792_at Syntaxin 1A mRNA [19] L76224_at NMDA receptor mRNA [20] M16282_at "GB DEF = Fragile X locus M2C containing an unidentified open reading frame, 3' end" [21] M21985_at ORPHAN RECEPTOR TR2 [22] M29273_at MAG Myelin-associated glycoprotein [23] M37984_rna1_at Slow twitch skeletal muscle/cardiac muscle troponin C gene [24] M55268_at "CSNK2A2 Casein kinase 2, alpha prime polypeptide" [25] M62783_at "NAGA N-acetylgalactosaminidase, alpha-" [26] M77836_at PYCR1 Pyrroline-5-carboxylate reductase 1 [27] M80333_at GB DEF = M5 muscarinic acetylcholine receptor gene [28] M81830_at GB DEF = Somatostatin receptor isoform 2 (SSTR2) gene [29] M87434_at 69/71 KD [30] M98539_at Prostaglandin D2 synthase gene [31] M98776_rna1_at Keratin 1 gene [32] S74445_at "Cellular retinoic acid-binding protein [human, skin, mRNA, 735 nt]" [33] S77812_at FLT1 Fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) [34] S90469_at "Cytochrome P450 reductase [human, placenta, mRNA Partial, 2403 nt]" [35] U00943_at GB DEF = Clone A9A2BRB2 (CAC)n/(GTG)n repeat-containing mRNA [36] U08989_at Glutamate transporter mRNA [37] U09825_at ZNF173 Acid finger protein ZNF173 [38] U11872_at "GB DEF = Interleukin-8 receptor type B (IL8RB) mRNA, splice variant IL8RB1, partial cds" [39] U13706_at "GB DEF = ELAV-like neuronal protein 1 isoform Hel-N2 (Hel-N1) mRNA, partial cds" [40] U25750_at GB DEF = Chromosome 17q21 mRNA clone 1046:1-1 [41] U28687_at ZNF157 Zinc finger protein 157 (HZF22) [42] U43177_at GB DEF = Urocortin gene [43] U43527_at "Malignant melanoma metastasis-suppressor (KiSS-1) gene, mRNA" [44] U48408_at Kidney water channel (hKID) mRNA [45] U63541_at "GB DEF = mRNA expressed in HC/HCC livers and MolT-4 proliferating cells, partial sequence" [46] U63842_at GB DEF = Neurogenic basic-helix-loop-helix protein (neuroD3) gene [47] U65581_at Ribosomal protein L3-like mRNA [48] U66615_at SWI/SNF complex 155 KDa subunit (BAF155) mRNA [49] U82311_at "GB DEF = Unknown protein mRNA, partial cds" [50] U85245_at Phosphatidylinositol-4-phosphate 5-kinase type II beta mRNA [51] U89336_cds4_at "Unknown gene extracted from Human HLA class III region containing NOTCH4 gene, partial sequence, homeobox PBX2 (HPBX) gene, receptor for advanced glycosylation end products (RAGE) gene, and 6 unidentified cds, complete sequence" [52] U90550_at Butyrophilin (BTF2) mRNA [53] X01715_at GB DEF = Gene fragment for the acetylcholine receptor gamma subunit precursor (exons 1 and 2) [54] X07024_at TRANSCRIPTION INITIATION FACTOR TFIID 250 KD SUBUNIT [55] X61072_at "T cell receptor, clone IGRA17" [56] X64037_at "GTF2F1 General transcription factor IIF, polypeptide 1 (74kD subunit)" [57] X66403_at "CHRNE Cholinergic receptor, nicotinic, epsilon polypeptide" [58] X76104_at GB DEF = DAP-kinase mRNA [59] X78549_at Brk mRNA for tyrosine kinase [60] X80915_rna1_at Gdf5 gene [61] X86681_at "Nucleolar protein, HNP36" [62] X97198_at "Receptor protein tyrosine phosphatase hPTP-J precursor, mRNA" [63] X99142_at "GB DEF = Hair keratin, hHb6" [64] Y11897_at GB DEF = Brx gene 3'UTR [65] Z14000_at RING1 Ring finger protein 1 [66] Z22536_at SERINE/THREONINE-PROTEIN KINASE RECEPTOR R2 PRECURSOR [67] Z48512_at GB DEF = XG mRNA (clone PEP6) [68] Z70219_at GB DEF = 5'UTR for unknown protein (clone ICRFp507C0696) [69] M69013_at "GNA11 Guanine nucleotide binding protein (G protein), alpha 11 (Gq class)" [70] U13022_at Negative regulator of programmed cell death ICH-1S (Ich-1) mRNA [71] AB002356_s_at DENN mRNA [72] D49487_s_at LEP Leptin (murine obesity homolog) [73] HG4113-HT4383_s_at Olfactory Receptor Or17-201 [74] HG721-HT4828_s_at "Placental Protein 14, Endometrial Alpha 2 Globulin, Alt. Splice 3" [75] S40719_s_at GFAP Glial fibrillary acidic protein [76] U11875_s_at "GB DEF = Interleukin-8 receptor type B (IL8RB) mRNA, splice variant IL8RB4, partial cds" [77] M22348_s_at UQCRB Ubiquinol-cytochrome c reductase binding protein [78] M60284_s_at "GB DEF = Neurokinin A receptor (NK-2R) gene, exon 5" [79] X65962_s_at "CYP2C17 Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 17" [80] S72503_s_at HRK1 [81] S83513_s_at ADCYAP1 Adenylate cyclase activating polypeptide 1 (pituitary) [82] HG2148-HT2218_f_at "Mucin 3, Intestinal (Gb:M55406)" [83] HG4108-HT4378_at Olfactory Receptor Or17-24 [84] M99439_at "GB DEF = Transducin-like enhancer protein (TLE4) mRNA, 3' end" [85] U25975_at "Serine kinase (hPAK65) mRNA, partial cds" [86] X69115_at ZNF37A Zinc finger protein 37a (KOX 21) [87] M25667_at GAP43 Growth associated protein 43 [88] X95876_at GB DEF = G-protein coupled receptor [89] X98253_at ZNF183 gene [90] U10690_f_at MAGE-5a antigen (MAGE5a) gene [91] M93143_at PLGL Plasminogen-like protein [92] X83863_at PTGER3 Prostaglandin E receptor 3 (subtype EP3) {alternative products} ------------------------------------------------------------ clusterID = 72 # of genes = 15 -------------------------- [1] HG2810-HT2921_at Homeotic Protein Pl2 [2] J04990_at CATHEPSIN G PRECURSOR [3] M16424_at BETA-HEXOSAMINIDASE ALPHA CHAIN PRECURSOR [4] M25077_at 60-kdal ribonucleoprotein (Ro) mRNA [5] S74017_at Nrf2 [6] U41813_at HOXA9 Homeo box A9 [7] U47621_at Nucleolar autoantigen No55 mRNA [8] U82759_at GB DEF = Homeodomain protein HoxA9 mRNA [9] X70297_at "CHRNA7 Cholinergic receptor, nicotinic, alpha polypeptide 7" [10] X96719_at GB DEF = AICL (activation-induced C-type lectin) [11] M31520_rna1_at Unknown protein gene extracted from Human ribosomal protein S24 mRNA [12] X58431_rna2_s_at HOX 2.2 gene extracted from Human Hox2.2 gene for a homeobox protein [13] HG3921-HT4191_f_at "Homeotic Protein C6, Class I" [14] HG4322-HT4592_at "Tubulin, Beta" [15] L76568_xpt3_f_at "S26 from Homo sapiens excision and cross link repair protein (ERCC4) gene, complete genomic sequence./ntype=DNA /annot=exon" ------------------------------------------------------------ clusterID = 73 # of genes = 50 -------------------------- [1] AFFX-BioB-5_st AFFX-BioB-5_st (endogenous control) [2] AFFX-HUMTFRR/M11507_5_at AFFX-HUMTFRR/M11507_5_at (endogenous control) [3] AFFX-HUMTFRR/M11507_M_at AFFX-HUMTFRR/M11507_M_at (endogenous control) [4] AFFX-HUMTFRR/M11507_3_at AFFX-HUMTFRR/M11507_3_at (endogenous control) [5] AB000584_at Prostate differentiation factor mRNA [6] D26308_at NADPH-flavin reductase [7] D87937_at "GB DEF = Alpha(1,2)fucosyltransferase, 5'UTR partial sequence" [8] J05500_at "SPTB Spectrin, beta, erythrocytic (includes sperocytosis, clinical type I)" [9] K03195_at (HepG2) glucose transporter gene mRNA [10] L11239_at "Homeobox protein (HOX) gene, 3' end" [11] L37033_at FK-506 binding protein homologue (FKBP38) mRNA [12] L76200_at Guanylate kinase (GUK1) mRNA [13] M14016_at UROD Uroporphyrinogen decarboxylase [14] M24470_at G6PD Glucose-6-phosphate dehydrogenase [15] M27819_at "SLC4A1 Solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3)" [16] M61764_at "TUBG Tubulin, gamma polypeptide" [17] M64934_at XK Kell blood group precursor (McLeod phenotype) [18] M75126_at HK1 Hexokinase 1 [19] M80244_at INTEGRAL MEMBRANE PROTEIN E16 [20] M84349_at "CD59 CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344)" [21] M95623_cds1_at PBGD gene (hydroxymethylbilane synthase) extracted from Homo sapiens hydroxymethylbilane synthase gene [22] U01317_cds6_at Beta-globin thalassemia gene extracted from Human beta globin region on chromosome 11 [23] U02081_at Guanine nucleotide regulatory protein (NET1) mRNA [24] U21049_at GB DEF = DD96 mRNA [25] U39412_at Platelet alpha SNAP mRNA [26] U61836_at "Putative cyclin G1 interacting protein mRNA, partial sequence" [27] U66468_at Cell growth regulator CGR11 mRNA [28] X01060_at "TFRC Transferrin receptor (p90, CD71)" [29] X06482_at GB DEF = Theta 1-globin gene [30] X13293_at MYBL2 V-myb avian myeloblastosis viral oncogene homolog-like 2 [31] Z22548_at Thiol-specific antioxidant protein mRNA [32] Z84721_cds1_at "Zeta-globin 1 gene extracted from Human DNA sequence from cosmid GG1 from a contig from the tip of the short arm of chromosome 16, spanning 2Mb of 16p13.3 Contains alpha and zeta globin genes and ESTs" [33] U36341_rna1_at "SLC6A8 gene (creatine transporter) extracted from Human Xq28 cosmid, creatine transporter (SLC6A8) gene, and CDM gene, partial cds" [34] HG627-HT5097_s_at "Rhesus (Rh) Blood Group System Ce-Antigen, Alt. Splice 2, Rhvi" [35] HG627-HT5098_s_at "Rhesus (Rh) Blood Group System Ce-Antigenl, Alt. Splice 3, Rhviii" [36] J05036_s_at CTSE Cathepsin E [37] M60974_s_at DDIT1 DNA-damage-inducible transcript 1 [38] S77893_s_at "GB DEF = GPSAT=glycophorin SAT [human, peripheral bloods, mRNA Partial, 407 nt]" [39] M60891_s_at "GB DEF = Uroporphyrinogen decarboxylase (URO-D) gene, partial cds" [40] M36284_s_at GYPC Glycophorin C (Gerbich blood group) [41] M61826_s_at SPECTRIN ALPHA CHAIN [42] X63131_s_at PML Probable transcription factor PML {alternative products} [43] X85116_rna1_s_at Epb72 gene exon 1 [44] U79261_s_at "Clone 23959 mRNA, partial cds" [45] HG3565-HT3768_r_at Zinc Finger Protein (Gb:M88357) [46] D17793_at DDH1 Dihydrodiol dehydrogenase [47] L08010_at Regenerating protein I beta [48] U01317_cds4_at Delta-globin gene extracted from Human beta globin region on chromosome 11 [49] X87211_at GB DEF = Anion exchange protein [50] M71243_f_at "GB DEF = Glycophorin Sta (type A) exons 3 and 4, partial" ------------------------------------------------------------ clusterID = 74 # of genes = 29 -------------------------- [1] AFFX-HSAC07/X00351_3_st AFFX-HSAC07/X00351_3_st (endogenous control) [2] D25547_at PIMT isozyme I [3] D50918_at "KIAA0128 gene, partial cds" [4] D89016_at Neuroblastoma [5] HG1078-HT1078_at Lamin-Like Protein (Gb:M24732) [6] HG1723-HT1729_at "Macrophage Scavenger Receptor, Alt. Splice 2" [7] HG2992-HT5186_at "Beta-Hexosaminidase, Alpha Polypeptide, Abnormal Splice Mutation" [8] L34059_at CDH4 Cadherin 4 [9] M19159_at "ALPP Alkaline phosphatase, placental (Regan isozyme)" [10] M35128_at GB DEF = M1 gene for muscarinic acetylcholine receptor [11] M55671_at VITAMIN K-DEPENDENT PROTEIN Z PRECURSOR [12] M65085_at FSHR Follicle stimulating hormone receptor [13] M88279_at FKBP4 FK506-binding protein 4 (59kD) [14] U06863_at Follistatin-related protein precursor mRNA [15] U33147_at Mammaglobin mRNA [16] U43148_at PTCH Patched (Drosophila) homolog [17] U78556_at Cisplatin resistance associated alpha protein (hCRA alpha) mRNA [18] X74328_rna1_at CB2 (peripheral) cannabinoid receptor gene extracted from H.sapiens mRNA for CB2 (peripheral) cannabinoid receptor [19] X96849_at GB DEF = 5' mRNA of PECAM-1 molecule [20] X99141_at "GB DEF = Hair keratin, hHb3" [21] Y10936_at GB DEF = Hypothetical protein downstream of DMPK and DMAHP [22] Z48481_at MT-MMP protein [23] U58675_cds2_at "OR17-40 gene extracted from Human olfactory receptor gene cluster on chromosome 17, OR17-228 and OR17-40, and OR17-24 and OR17-25 pseudogenes" [24] X73478_at HPTPA mRNA [25] HG982-HT982_s_at Pre-T/Nk-Cell-Associated Protein 1f6 [26] X70940_s_at EEF1A2 Eukaryotic translation elongation factor 1 alpha 2 [27] M34353_s_at ROS1 Transmembrane tyrosine-specific protein kinase ROS1 [28] X66142_s_at "PDE6B Phosphodiesterase 6B, cGMP-specific, rod, beta" [29] U92027_at Clone 61501 defective mariner transposon Hsmar2 mRNA sequence ------------------------------------------------------------ clusterID = 75 # of genes = 76 -------------------------- [1] AB003177_at Proteasome subunit p27 [2] D00760_at PSMA3 Proteasome component C3 [3] D00761_at PSMA5 Proteasome component C5 [4] D13748_at EIF4A1 Eukaryotic translation initiation factor 4A (eIF-4A) isoform 1 [5] D14710_at "ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle" [6] D21262_at "KIAA0035 gene, partial cds" [7] D26600_at PROTEASOME BETA CHAIN PRECURSOR [8] D28383_at "GB DEF = ATP synthase B chain, 5'UTR (sequence from the 5'cap to the start codon)" [9] D31890_at "KIAA0070 gene, partial cds" [10] D38047_at 26S PROTEASOME REGULATORY SUBUNIT P31 [11] D38048_at Proteasome subunit z [12] D55654_at "MDH1 Malate dehydrogenase 1, NAD (soluble)" [13] D86972_at KIAA0218 gene [14] D89667_at C-myc binding protein [15] HG1112-HT1112_at Ras-Like Protein Tc4 [16] HG1153-HT1153_at Nucleoside Diphosphate Kinase Nm23-H2s [17] HG2274-HT2370_at "Rna Polymerase Ii, 14.5 Kda Subunit" [18] HG311-HT311_at Ribosomal Protein L30 [19] HG4297-HT4567_at Transcriptional Coactivator Pc4 [20] J04611_at G22P1 Thyroid autoantigen 70kD (Ku antigen) [21] J04973_at LGALS1 Ubiquinol-cytochrome c reductase core protein II [22] J04988_at "90-kDa heat-shock protein gene, cDNA" [23] L02426_at 26S PROTEASE REGULATORY SUBUNIT 4 [24] L10284_at CANX Calnexin [25] L12535_at RSU-1/RSP-1 mRNA [26] L12723_at HSPA4 Heat shock 70kD protein 4 [27] L34587_at "RNA polymerase II elongation factor SIII, p15 subunit mRNA" [28] L76159_at FRG1 mRNA [29] M13450_at ESD Esterase D/formylglutathione hydrolase [30] M14200_rna1_at Diazepam binding inhibitor (DBI) mRNA [31] M19483_at "ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide" [32] M22877_at CYC1 Cytochrome c-1 [33] M23613_at "NPM1 Nucleophosmin (nucleolar phosphoprotein B23, numatrin)" [34] M64992_at PSMA2 Proteasome component C2 [35] M69039_at "PRE-MRNA SPLICING FACTOR SF2, P32 SUBUNIT PRECURSOR" [36] U07857_at SRP14 Signal recognition particle 14 kD protein [37] U09813_at "Mitochondrial ATP synthase subunit 9, P3 gene copy, mRNA, nuclear gene encoding mitochondrial protein" [38] U15008_at SnRNP core protein Sm D2 mRNA [39] U15009_at SnRNP core protein Sm D3 mRNA [40] U25165_at Fragile X mental retardation protein 1 homolog FXR1 mRNA [41] U34343_at "GB DEF = 13kD differentiation-associated protein mRNA, partial cds" [42] U36764_at EIF3 Eukaryotic translation initiation factor 3 (eIF-3) p36 subunit [43] U51004_at Putative protein kinase C inhibitor (PKCI-1) mRNA [44] U51678_at Small acidic protein mRNA [45] U62962_at Int-6 mRNA [46] U72511_at "B-cell receptor associated protein (hBAP) mRNA, partial cds" [47] U90313_at Glutathione-S-transferase homolog mRNA [48] U91327_at GB DEF = Chromosome 12p15 BAC clone CIT987SK-99D8 complete sequence [49] X13794_rna1_at Lactate dehydrogenase B gene exon 1 and 2 (EC 1.1.1.27) (and joined CDS) [50] X15822_at COX7A2 Cytochrome c oxidase VIIa subunit (liver specific) [51] X16560_at COX7C Cytochrome c oxidase VIIc subunit [52] X56468_at 14-3-3 PROTEIN TAU [53] X60221_at "ATP5F1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" [54] X60489_at Elongation factor-1-beta [55] X77584_at TXN Thioredoxin [56] X80695_at RPL27 Ribosomal protein L27 [57] X80909_at Alpha NAC mRNA [58] X85372_at Sm protein F [59] X85373_at Sm protein G [60] X91788_at Icln protein [61] X99585_at SMT3B protein [62] Y00764_at ARH9 Aplysia ras-related homolog 9 [63] Y00971_at PRPS2 Phosphoribosyl pyrophosphate synthetase 2 [64] Y11681_at GB DEF = Mitochondrial ribosomal protein S12 [65] L11066_at MITOCHONDRIAL STRESS-70 PROTEIN PRECURSOR [66] M16342_at HnRNP C2 protein mRNA [67] HG1322-HT5143_s_at "Small Nuclear Ribonucleoprotein, Polypeptide C, Alt. Splice 2" [68] HG1595-HT4788_s_at "Heterogeneous Nuclear Ribonucleoprotein I, Alt. Splice 2, Ptb-1" [69] X17567_s_at SNRPB Small nuclear ribonucleoprotein polypeptides B and B1 [70] X52979_rna1_s_at SmB protein gene extracted from Human gene for small nuclear ribonucleoproteins SmB and SmB' [71] M30448_s_at GB DEF = Casein kinase II beta subunit mRNA [72] U26312_s_at Heterochromatin protein HP1Hs-gamma mRNA [73] U33936_s_at GB DEF = Adenosine kinase mRNA [74] U44799_s_at U1-snRNP binding protein homolog mRNA [75] U68105_s_at PABPL1 Poly(A)-binding protein-like 1 [76] HG1515-HT1515_f_at Transcription Factor Btf3b ------------------------------------------------------------ clusterID = 76 # of genes = 20 -------------------------- [1] AF009674_at "Axin (AXIN) mRNA, partial cds" [2] D31883_at KIAA0059 gene [3] D83735_at Adult heart mRNA for neutral calponin [4] J04164_at RPS3 Ribosomal protein S3 [5] L13210_at Mac-2 binding protein mRNA [6] M21624_at "TCRD T-cell receptor, delta" [7] M21984_at "TROPONIN T, FAST SKELETAL MUSCLE ISOFORM BETA" [8] M85169_at Homologue of yeast sec7 mRNA [9] S59049_at RGS1 Regulator of G-protein signalling 1 [10] U02031_at Sterol regulatory element binding protein-2 mRNA [11] X06614_at Receptor of retinoic acid [12] X69819_at ICAM3 Intercellular adhesion molecule 3 [13] Z35278_at PEBP2aC1 acute myeloid leukaemia mRNA [14] M37271_s_at T-CELL ANTIGEN CD7 PRECURSOR [15] D00749_s_at T-CELL ANTIGEN CD7 PRECURSOR [16] X57351_at RPS3 Ribosomal protein S3 [17] HG1763-HT1780_s_at Prolactin-Induced Protein [18] U43185_s_at STAT5A Signal transducer and activator of transcription 5A [19] U22970_rna1_s_at 6-16 gene (interferon-inducible peptide precursor) extracted from Human interferon-inducible peptide (6-16) gene [20] X98534_s_at "VASP gene, exons 4 to 13" ------------------------------------------------------------ clusterID = 77 # of genes = 43 -------------------------- [1] AB000468_at "Zinc finger protein, clone RES4-26" [2] AB003102_at Proteasome subunit p44.5 [3] D14695_at APOA2 Apolipoprotein A-II [4] D38551_at KIAA0078 gene [5] D63998_at "MANA2 Mannosidase, alpha type II" [6] K02545_cds2_at TCRB gene extracted from Human T-cell receptor germline beta-chain J-beta-1 gene cluster: J-beta-1-1 and J-beta-1-2 genes; and D-beta-1-1 gene [7] L25085_at PROTEIN TRANSPORT PROTEIN SEC61 BETA SUBUNIT [8] L27560_at Insulin-like growth factor binding protein 5 (IGFBP5) mRNA [9] M15661_at RPL44 Ribosomal protein L44 [10] M19989_cds2_at Platelet-derived growth factor (PDGFA) A chain gene [11] M61199_at CLEAVAGE SIGNAL-1 PROTEIN [12] M65217_at HEAT SHOCK FACTOR PROTEIN 2 [13] S81003_at L-UBC [14] S83364_at "GB DEF = Putative Rab5-interacting protein {clone L1-57} [human, HeLa cells, mRNA Partial, 366 nt]" [15] S87759_at "Protein phosphatase 2C alpha [human, teratocarcinoma, mRNA, 2346 nt]" [16] U05237_at Fetal Alz-50-reactive clone 1 (FAC1) mRNA [17] U25435_at Transcriptional repressor (CTCF) mRNA [18] U43899_at Signal transducing adaptor molecule STAM mRNA [19] U58334_at "Bcl2, p53 binding protein Bbp/53BP2 (BBP/53BP2) mRNA" [20] U76638_at BRCA1-associated RING domain protein (BARD1) mRNA [21] U78524_at "Gu binding protein mRNA, partial cds" [22] U81001_at "SNRPN mRNA, 3' UTR, partial sequence" [23] X13482_at U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A' [24] X52425_at IL4R Interleukin 4 receptor [25] X63679_at TRAMP protein [26] X80200_at MLN62 mRNA [27] X89985_at BCL7 B cell lymphoma protein 7B [28] X92098_at Transmembrane protein rnp24 [29] X92972_at Protein phosphatase 6 [30] X99584_at SMT3A protein [31] L40397_at "(clone S31i125) mRNA, 3' end of cds" [32] D78132_s_at "Ras homologue enriched in brain (RHEB) gene, Ras-related GTP binding protein gene" [33] D85131_s_at Myc-associated zinc-finger protein of human islet [34] L15189_s_at MITOCHONDRIAL STRESS-70 PROTEIN PRECURSOR [35] U61734_s_at "(clone S31i125) mRNA, 3' end of cds" [36] Y08765_s_at ZFM1 protein alternatively spliced product [37] Y08766_s_at "GB DEF = Splicing factor, SF1-Bo isoform" [38] U09510_s_at GARS Glycyl-tRNA synthetase [39] U67122_s_at Ubiquitin-homology domain protein PIC1 mRNA [40] X70944_s_at PTB-ASSOCIATED SPLICING FACTOR [41] X74874_rna1_s_at "RNA polymerase II largest subunit gene extracted from H.sapiens gene for RNA pol II largest subunit, exon 1" [42] X82206_s_at ALPHA-CENTRACTIN [43] HG3141-HT3317_f_at "Nadh-Ubiquinone Oxidoreductase, 39 Kda Subunit" ------------------------------------------------------------ clusterID = 78 # of genes = 62 -------------------------- [1] AB004884_at "PKU-alpha, partial cds" [2] D28416_at "GB DEF = Esterase D, 5'UTR (sequence from the 5'cap to the start codon)" [3] D42053_at KIAA0091 gene [4] D50525_at GB DEF = TI-227H [5] D50911_at KIAA0121 gene [6] D86977_at KIAA0224 gene [7] D87437_at KIAA0250 gene [8] HG1612-HT1612_at Macmarcks [9] L03532_at M4 protein mRNA [10] L10838_at PRE-MRNA SPLICING FACTOR SRP20 [11] L13434_at Chromosome 3p21.1 gene sequence [12] L13848_at LKP DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 9 (RNA helicase A) [13] L13972_at "SIAT4A Sialyltransferase 4A (beta-galactosidase alpha-2,3-sialytransferase)" [14] L20010_at HCF1 gene related mRNA sequence [15] L20773_at mRNA in the region near the btk gene involved in a-gamma-globulinemia [16] L22009_at HnRNP H mRNA [17] L36151_at PHOSPHATIDYLINOSITOL 4-KINASE ALPHA [18] L37127_at (clone mf.18) RNA polymerase II mRNA [19] L37368_at (clone E5.1) RNA-binding protein mRNA [20] M33518_at LARGE PROLINE-RICH PROTEIN BAT2 [21] M34175_at "CLAPB1 Clathrin-associated/assembly/adaptor protein, large, beta 1" [22] M63483_at MATRIN 3 [23] M64673_at HEAT SHOCK FACTOR PROTEIN 1 [24] M74099_at CUTL1 Cut (Drosophila)-like 1 (CCAAT displacement protein) [25] M86400_at "YWHAZ Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" [26] M97287_at SATB1 Special AT-rich sequence binding protein 1 (binds to nuclear matrix/scaffold-associating DNA's) [27] S63912_at D10S102 [28] U10323_at Nuclear factor NF45 mRNA [29] U23803_at Heterogeneous ribonucleoprotein A0 mRNA [30] U37408_at CtBP mRNA [31] U47742_at Monocytic leukaemia zinc finger protein (MOZ) mRNA [32] U49070_at Peptidyl-prolyl isomerase and essential mitotic regulator (PIN1) mRNA [33] U51478_at Sodium/potassium-transporting ATPase beta-3 subunit mRNA [34] U53209_at Transformer-2 alpha (htra-2 alpha) mRNA [35] U64444_at Ubiquitin fusion-degradation protein (UFD1L) mRNA [36] U67369_at Growth factor independence-1 (Gfi-1) mRNA [37] U68723_at NADH:ubiquinone oxidoreductase subunit B13 (B13) mRNA [38] U78095_at Placental bikunin mRNA [39] U79287_at Clone 23867 mRNA sequence [40] U89505_at Hlark mRNA [41] U90426_at Nuclear RNA helicase [42] U94319_at "Autoantigen DFS70 mRNA, partial cds" [43] X02596_at GB DEF = Bcr (breakpoint cluster region) gene in Philadelphia chromosome [44] X03484_at RAF1 V-raf-1 murine leukemia viral oncogene homolog 1 [45] X07315_at NUCLEAR TRANSPORT FACTOR 2 [46] X16135_at HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L [47] X70218_at "PPP4C Protein phosphatase 4 (formerly X), catalytic subunit" [48] X71428_at RNA-BINDING PROTEIN FUS/TLS [49] X83928_at Transcription factor TFIID subunit TAFII28 [50] X86012_at "GB DEF = DNA sequence from intron 22 of the factor VIII gene, Xq28. Contains the end of a 9.5kb repeated region, int22h-1, involved in many cases of haemophilia" [51] X97544_at TIM17 preprotein translocase [52] Y09216_at "Protein kinase, Dyrk2" [53] Z23064_at HNRPG Heterogeneous nuclear ribonucleoprotein G [54] Z69915_at GB DEF = mRNA (clone ICRFp507L1876) [55] L49380_at "Transcription factor ZFM1 isoform B3 mRNA, complete cds" [56] X04526_at "GNB1 Guanine nucleotide binding protein (G protein), beta polypeptide 1" [57] X65488_at HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN U [58] M21142_cds2_s_at Guanine nucleotide-binding protein G-s-alpha-3 gene extracted from Human guanine nucleotide-binding protein alpha-subunit gene (G-s-alpha) [59] S54005_s_at THYMOSIN BETA-10 [60] U52077_s_at "GB DEF = Mariner1 transposase gene, complete consensus sequence" [61] X59244_f_at ZNF43 Zinc finger protein 43 (HTF6) [62] U03494_at Transcription factor LSF mRNA ------------------------------------------------------------ clusterID = 79 # of genes = 29 -------------------------- [1] D10495_at "PRKCD Protein kinase C, delta" [2] D38583_at Calgizzarin [3] D83920_at FCN1 Ficolin (collagen/fibrinogen domain-containing) 1 [4] HG544-HT544_at Endothelial Cell Growth Factor 1 [5] J03925_at "ITGAM Integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" [6] L13977_at LYSOSOMAL PRO-X CARBOXYPEPTIDASE PRECURSOR [7] L38820_at "CD1D CD1D antigen, d polypeptide" [8] M19722_at FGR Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog [9] M32011_at "NCF2 Neutrophil cytosolic factor 2 (65kD, chronic granulomatous disease, autosomal 2)" [10] M32315_at TNFR2 Tumor necrosis factor receptor 2 (75kD) [11] M33552_at GB DEF = Lymphocyte-specific protein 1 (LSP1) mRNA [12] M60830_at EVI2B PROTEIN PRECURSOR TROPIC VIRAL INTEGRATION SITE 2B PROTEIN) [13] M77349_at Transforming growth factor-beta induced gene product (BIGH3) mRNA [14] M90696_at CTSS Cathepsin S [15] U00115_at BCL6 B cell lymphoma protein 6 (zinc finger protein 51) [16] U00672_at IL10R Interleukin 10 receptor [17] U20350_at CMKRL1 Chemokine receptor-like 1 [18] U37518_at TNF-related apoptosis inducing ligand TRAIL mRNA [19] U45285_at Specific 116-kDa vacuolar proton pump subunit (OC-116KDa) mRNA [20] U57721_at L-kynurenine hydrolase mRNA [21] U80017_rna2_at "Naip gene (neuronal apoptosis inhibitory protein) extracted from Human basic transcription factor 2 p44 (btf2p44) gene, partial cds, neuronal apoptosis inhibitory protein (naip) and survival motor neuron protein (smn) genes" [22] X52056_at SPI1 Spleen focus forming virus (SFFV) proviral integration oncogene spi1 [23] X86809_at Major astrocytic phosphoprotein PEA-15 [24] Y00796_at "ITGAL Integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" [25] Z33642_at V7 mRNA for leukocyte surface protein [26] D10925_at CMKBR1 Chemokine (C-C) receptor 1 [27] HG998-HT998_s_at "Sulfotransferase, Phenol-Preferring" [28] X64072_s_at SELL Leukocyte adhesion protein beta subunit [29] U51333_s_at HK3 Hexokinase 3 (white cell) ------------------------------------------------------------ clusterID = 80 # of genes = 12 -------------------------- [1] AB000464_at "mRNA, clone RES4-24A, exon 1, 2, 3, 4" [2] D83780_at KIAA0196 gene [3] HG2036-HT2090_at Stimulatory Gdp/Gtp Exchange Protein For C-Ki-Ras P21 And Smg P21 [4] J04101_at GB DEF = Erythroblastosis virus oncogene homolog 1 (ets-1) mRNA [5] M65066_at "PRKAR1B Protein kinase, cAMP-dependent, regulatory, type I, beta" [6] S76965_at "Protein kinase inhibitor [human, neuroblastoma cell line SH-SY-5Y, mRNA, 2147 nt]" [7] U31382_at G protein gamma-4 subunit mRNA [8] U49352_at "Liver 2,4-dienoyl-CoA reductase mRNA" [9] U73799_at "GB DEF = Dynactin mRNA, partial cds" [10] X95406_at GB DEF = Cyclin E gene [11] Y11215_at SKAP55 protein [12] U51010_s_at "GB DEF = Nicotinamide N-methyltransferase gene, exon 1 and 5' flanking region" ------------------------------------------------------------ clusterID = 81 # of genes = 74 -------------------------- [1] AF000562_at "Uroplakin II mRNA, partial cds" [2] D42085_at KIAA0095 gene [3] L42324_at "GB DEF = (clone GPCR W) G protein-linked receptor gene (GPCR) gene, 5' end of cds" [4] M22430_at "PLA2G2A Phospholipase A2, group IIA (platelets, synovial fluid)" [5] M34667_at "PLCG1 Phospholipase C, gamma 1 (formerly subtype 148)" [6] M36089_at DNA-REPAIR PROTEIN XRCC1 [7] M93107_at D-BETA-HYDROXYBUTYRATE DEHYDROGENASE PRECURSOR [8] M93650_at Paired box gene (PAX6) homologue [9] S65583_rna1_at "SP-10=intra-acrosomal protein {alternatively spliced} [human, liver, Genomic, 2339 nt 4 segments]" [10] U03486_at GB DEF = Connexin40 gene [11] U05040_at FUSE binding protein mRNA [12] U07681_at NAD(H)-specific isocitrate dehydrogenase alpha subunit precursor mRNA [13] U07919_at ALDH6 Aldehyde dehydrogenase 6 [14] U12139_at "GB DEF = Alpha1(XI) collagen (COL11A1) gene, 5' region and exon 1" [15] U14391_at Myosin-IC mRNA [16] U31342_at NUCLEOBINDIN PRECURSOR [17] U32680_at "CLN3 Ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-vogt disease) " [18] U40490_at NAD(P) transhydrogenase [19] U47334_at "GB DEF = Gamma aminobutyric acid receptor beta4 subunit-like mRNA, partial cds" [20] U47634_at TUBB Beta-tubulin [21] U50062_at "Cell death protein (RIP) mRNA, partial cds" [22] U57877_at "Integral membrane protein CII-3 mRNA, nuclear gene encoding mitochondrial protein" [23] U58048_at PRSM1 Metallopeptidase 1 (33 kD) [24] U60269_cds3_at "Putative envelope protein; orf similar to env of Type A and Type B retroviruses and to class II HERVs gene extracted from Human endogenous retrovirus HERV-K(HML6) proviral clone HML6.17 putative polymerase and envelope genes, partial cds, and 3'LTR" [25] U63455_at SUR Sulfonylurea receptor (hyperinsulinemia) [26] U72508_at B7 mRNA [27] U77827_at GB DEF = Orphan G protein-coupled receptor (CEPR) gene [28] U78678_at "Thioredoxin mRNA, nuclear gene encoding mitochondrial protein" [29] U81802_at Phosphatidylinositol 4-kinase [30] U89278_at Polyhomeotic 2 homolog (HPH2) mRNA [31] X07948_at TNP1 Transition protein 1 (TP1) [32] X14329_at ACBP Arginine carboxypeptidase (carboxypeptidase N) [33] X55666_at Usf mRNA for late upstream transcription factor [34] X60188_at EXTRACELLULAR SIGNAL-REGULATED KINASE 1 [35] X60592_at CD40 CD40 antigen [36] X67155_at MITOTIC KINESIN-LIKE PROTEIN-1 [37] X68486_at ADENOSINE A2A RECEPTOR [38] X68733_rna1_at "Alpha1-antichymotrypsin, exon 1" [39] X70040_at MST1R Protein-tyrosine kinase RON [40] X72755_at Humig mRNA [41] X78136_at HnRNP-E2 mRNA [42] X80907_at GB DEF = P85 beta subunit of phosphatidyl-inositol-3-kinase [43] X86779_at FAST kinase [44] X89960_at Mitochondrial capsule selenoprotein [45] X91247_at TXNRD1 Thioredoxin reductase [46] X96484_at DGCR6 protein [47] X97160_rna1_at "TFE3 transcription factor gene extracted from H.sapiens TFE3 gene, exons 1,2,3 (and joined CDS)" [48] X97302_at GB DEF = Ptg-1 protein [49] Y08836_at GB DEF = HRX-like protein [50] Z29678_at MitF mRNA [51] Z67743_at "Chloride channel protein (CLCN7) mRNA, partial cds" [52] D13146_cds1_at "2',3'-cyclic-nucleotide 3'-phosphodiesterase gene extracted from Human 2',3'-cyclic-nucleotide 3'-phosphodiesterase gene" [53] U41518_at "AQP1 Aquaporin 1 (channel-forming integral protein, 28kD)" [54] U96131_at HPV16 E1 protein binding protein mRNA [55] X80818_at "GRM4 Glutamate receptor, metabotropic 4" [56] M15465_s_at "PKLR Pyruvate kinase, liver" [57] HG4541-HT4946_s_at Transformation-Related Protein [58] HG4069-HT4339_s_at Monocyte Chemotactic Protein 1 [59] HG3417-HT3600_s_at "Gtp Cyclohydrolase I, Alt. Splice 1" [60] Y00285_s_at IGF2R Insulin-like growth factor 2 receptor [61] Z22951_rna1_s_at Of p65 gene encoding p65 subunit of transcription factor NF-kappaB [62] L19493_s_at FRAGILE X MENTAL RETARDATION 1 PROTEIN [63] U15637_s_at CD40 receptor associated factor 1 (CRAF1) mRNA [64] U32986_s_at DDB1 Damage-specific DNA binding protein 1 (127 kD) [65] X72632_s_at GB DEF = mRNA encoding Rev-ErbAalpha (internal fragment) [66] X96506_s_at NC2 alpha subunit [67] U57971_s_at Calcium ATPase isoform 3x/a mRNA [68] U82108_s_at SIP-1 mRNA [69] M95936_s_at AKT2 V-akt murine thymoma viral oncogene homolog 2 [70] D49728_at NAK1 mRNA for DNA binding protein [71] M13485_at Metallothionein I-B gene [72] M60746_at GB DEF = Histone H3.1 (H1F3) gene [73] Z86000_at "GB DEF = DNA sequence from PAC 151B14 on chromosome 22q12-qter contains somatostatin receptor subtype 3 (SSTR3), tRNA, ESTs, CpG island and STS" [74] X97444_f_at GB DEF = Transmembrane protein Tmp21-IIex ------------------------------------------------------------ clusterID = 82 # of genes = 23 -------------------------- [1] D29643_at KIAA0115 gene [2] K03515_at GPI Glucose phosphate isomerase [3] L11669_at Tetracycline transporter-like protein mRNA [4] L42379_at "Quiescin (Q6) mRNA, partial cds" [5] M19507_at MPO Myeloperoxidase [6] M84526_at DF D component of complement (adipsin) [7] M93056_at LEUKOCYTE ELASTASE INHIBITOR [8] M96326_rna1_at Azurocidin gene [9] U30255_at PGD Phosphogluconate dehydrogenase [10] U46499_at "GLUTATHIONE S-TRANSFERASE, MICROSOMAL" [11] X04085_rna1_at "Catalase (EC 1.11.1.6) 5'flank and exon 1 mapping to chromosome 11, band p13 (and joined CDS)" [12] X12447_at ALDOA Aldolase A [13] X17042_at "PRG1 Proteoglycan 1, secretory granule" [14] X63359_at "UDP-GLUCURONOSYLTRANSFERASE 2B10 PRECURSOR, MICROSOMAL" [15] X87212_at CTSC Cathepsin C [16] Y07604_at Nucleoside-diphosphate kinase [17] D16480_at "HADHA Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [18] J02783_at "P4HB Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)" [19] X55990_rna1_at ECP gene for eosinophil cationic protein [20] U50327_s_at Protein kinase C substrate 80K-H gene (PRKCSH) [21] M27783_s_at "ELA2 Elastatse 2, neutrophil" [22] M20203_s_at "GB DEF = Neutrophil elastase gene, exon 5" [23] X16546_at RNS2 Ribonuclease 2 (eosinophil-derived neurotoxin; EDN) ------------------------------------------------------------ clusterID = 83 # of genes = 17 -------------------------- [1] M22919_rna2_at MLC gene (non-muscle myosin light chain) extracted from Human nonmuscle/smooth muscle alkali myosin light chain gene [2] M32053_at GB DEF = H19 RNA gene [3] M63904_at "GNA15 Guanine nucleotide binding protein (G protein), alpha 15 (Gq class)" [4] M68941_at GB DEF = Protein-tyrosine phosphatase mRNA [5] S65738_at "Actin depolymerizing factor [human, fetal brain, mRNA, 1452 nt]" [6] U56998_at Putative serine/threonine protein kinase PRK (prk) mRNA [7] U78190_rna1_at GTP cyclohydrolase I feedback regulatory protein gene [8] X59834_at GLUL Glutamate-ammonia ligase (glutamine synthase) [9] X60708_at "DPP4 Dipeptidylpeptidase IV (CD26, adenosine deaminase complexing protein 2)" [10] X97324_at GB DEF = Adipophilin [11] X98172_at MACH-alpha-2 protein [12] Z35227_at TTF mRNA for small G protein [13] HG4312-HT4582_s_at Transcription Factor Iiia [14] X62891_s_at Mutant coseg gene for vasopressin-neurophysin precursor [15] U04806_s_at GB DEF = FLT3/FLK2 ligand mRNA [16] U03858_at FLT3LG Fms-related tyrosine kinase 3 ligand [17] U27460_at Uridine diphosphoglucose pyrophosphorylase mRNA ------------------------------------------------------------ clusterID = 84 # of genes = 47 -------------------------- [1] AB001106_at GLIA MATURATION FACTOR BETA [2] D43636_at "KIAA0096 gene, partial cds" [3] D43951_at "ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR" [4] D79993_at KIAA0171 gene [5] D80009_at KIAA0187 gene [6] D87449_at "KIAA0260 gene, partial cds" [7] HG2167-HT2237_at "Protein Kinase Ht31, Camp-Dependent" [8] L10910_at Splicing factor (CC1.3) mRNA [9] M15990_at C-yes-1 mRNA [10] M61906_at PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT [11] M77698_at YY1 YY1 transcription factor [12] M82882_at ETS-RELATED TRANSCRIPTION FACTOR ELF-1 [13] S73591_at "Brain-expressed HHCPA78 homolog [human, HL-60 acute promyelocytic leukemia cells, mRNA, 2704 nt]" [14] U03105_at B4-2 protein mRNA [15] U07802_at ERF-2 mRNA [16] U15173_at EEF1A1 Translation elongation factor 1-alpha-1 [17] U18062_at TFIID subunit TAFII55 (TAFII55) mRNA [18] U36922_at "GB DEF = Fork head domain protein (FKHR) mRNA, 3' end" [19] U47635_at D13S824E locus mRNA [20] U51990_at HPrp18 mRNA [21] U70322_at Transportin (TRN) mRNA [22] U71598_at "Zinc finger protein zfp2 (zf2) mRNA, partial cds" [23] U73524_at Putative ATP/GTP-binding protein (HEAB) mRNA [24] U89355_at "Clone cRT16 CREB-binding protein mRNA, partial cds" [25] U90909_at Clone 23722 mRNA sequence [26] U90911_at Clone 23652 mRNA sequence [27] U92014_at Clone 121711 defective mariner transposon Hsmar2 mRNA sequence [28] X04201_at Skeletal muscle 1.3 kb mRNA for tropomyosin [29] X17025_at Homolog of yeast IPP isomerase [30] X61123_at "BTG1 B-cell translocation gene 1, anti-proliferative" [31] X75962_at OX40L RECEPTOR PRECURSOR [32] X78669_at ERC-55 mRNA [33] X85545_at "GB DEF = Protein kinase, PKX1" [34] Z25535_at Nuclear pore complex protein hnup153 [35] Z29090_at "PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT, ALPHA ISOFORM" [36] D45132_at Kidney mRNA for zinc-finger DNA-binding protein [37] D86550_at Serine/threonine protein kinase [38] X72727_at HNRPK Heterogeneous nuclear ribonucleoprotein K [39] L06797_s_at PROBABLE G PROTEIN-COUPLED RECEPTOR LCR1 HOMOLOG [40] Z35085_s_at KIAA0203 gene [41] HG3148-HT3324_s_at "Major Histocompatibility Complex, Class Iii, Rp1, Alt. Splice 1" [42] J04029_s_at Keratin 10 type I intermediate filament (KRT10) mRNA [43] U22431_s_at MOP1 mRNA [44] U43189_s_at "Ets transcription factors NERF-1a and NERF-1b (NERF-1a,b) mRNA" [45] HG4557-HT4962_at "Small Nuclear Ribonucleoprotein U1, 1snrp" [46] HG4557-HT4962_r_at "Small Nuclear Ribonucleoprotein U1, 1snrp" [47] X06318_at "PRKCB1 Protein kinase C, beta 1" ------------------------------------------------------------ clusterID = 85 # of genes = 47 -------------------------- [1] AB000409_at MNK1 [2] D13628_at ANGPT1 Angiopoietin 1 [3] D80010_at "KIAA0188 gene, partial cds" [4] D87071_at KIAA0233 gene [5] D87432_at KIAA0245 gene [6] D87433_at "KIAA0246 gene, partial cds" [7] D87444_at KIAA0255 gene [8] J05682_at "ATP6D ATPase, H+ transporting, lysosomal (vacuolar proton pump) 42kD" [9] L10343_at "PI3 Protease inhibitor 3, skin-derived (SKALP)" [10] L13738_at Activated p21cdc42Hs kinase (ack) mRNA [11] L13852_at "UBE1L Ubiquitin-activating enzyme E1, like" [12] L16896_at Zinc finger protein mRNA [13] L23852_at "(clone Z146) retinal mRNA, 3' end and repeat region" [14] L28821_at MANA2 Alpha mannosidase II isozyme [15] L39059_at Transcription factor SL1 mRNA [16] L40392_at "(clone S164) mRNA, 3' end of cds" [17] L48546_at TSC2 Tuberin [18] M13241_at N-MYC PROTO-ONCOGENE PROTEIN [19] M16973_at "C8B Complement component 8, beta polypeptide" [20] M64099_at GAMMA-GLUTAMYLTRANSPEPTIDASE 5 PRECURSOR [21] M73077_at Glucocorticoid receptor repression factor 1 (GRF-1) mRNA [22] M80359_at PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 [23] M95678_at "PLCB2 Phospholipase C, beta 2" [24] M95787_at 22kDa smooth muscle protein (SM22) mRNA [25] U07158_at Syntaxin mRNA [26] U08023_at Cellular proto-oncogene (c-mer) mRNA [27] U09366_at ZNF133 Zinc finger protein 133 (clone pHZ-13) [28] U30999_at "GB DEF = (memc) mRNA, 3'UTR" [29] U32324_at Interleukin 11 receptor isoform (incomplete) [30] U38847_at TAR RNA loop binding protein (TRP-185) mRNA [31] U53786_at EVPL Envoplakin [32] U66559_at "NPM1 Nucleophosmin (nucleolar phosphoprotein B23, numatrin)" [33] U68142_at "RalGDS-like 2 (RGL2) mRNA, partial cds" [34] U77413_at O-linked GlcNAc transferase mRNA [35] U90908_at Clones 23549 and 23762 mRNA [36] X13956_at 9 KD PROTEIN [37] X16667_at HOXB3 Homeo box B3 [38] X67098_at RTS beta protein [39] X73079_at GIF Polymeric immunoglobulin receptor [40] X87237_at Processing a-glucosidase I [41] Y08374_rna1_at "GP-39 cartilage protein gene extracted from H.sapiens gene encoding cartilage GP-39 protein, exon 1 and 2 (and joined CDS)" [42] Y09858_at Unknown protein [43] Z18954_at S100A5 S100 calcium-binding protein A5 (formerly S100D) [44] Y08682_rna1_s_at Carnitine palmitoyltransferase I type I [45] HG4755-HT5203_s_at Spinal Muscular Atrophy 4 [46] HG4757-HT5207_s_at "Oncogene Mll-Af4, Fusion Activated" [47] Z80345_rna1_s_at "SCAD gene, exon 1 and joining features" ------------------------------------------------------------ clusterID = 86 # of genes = 21 -------------------------- [1] L35035_at Ribose 5-phosphate isomerase (RPI) mRNA [2] L40027_at Glycogen synthase kinase 3 mRNA [3] M80335_at "Protein kinase A catalytic subunit mRNA, 3' end" [4] M83088_at PGM1 Phosphoglucomutase 1 [5] M86852_at "PXMP3 Peroxisomal membrane protein 3 (35kD, Zellweger syndrome)" [6] U11791_at CCNH Cyclin H [7] U13737_at Cysteine protease CPP32 isoform alpha mRNA [8] U26710_at Cbl-b mRNA [9] U28386_at RCH1 RAG (recombination activating gene) cohort 1 [10] U49785_at "DCT Dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)" [11] U82613_at DNA-binding protein ABP/ZF mRNA [12] U92436_at Mutated in multiple advanced cancers protein (MMAC1) mRNA [13] X01630_at ASS Argininosuccinate synthetase [14] X54304_at Myosin regulatory light chain mRNA [15] X65867_at ADENYLOSUCCINATE LYASE [16] X66141_at "MYL2 Myosin, light polypeptide 2, regulatory, cardiac, slow" [17] X69978_at ERCC5 DNA excision repair protein ERCC5 [18] D50405_at RPD3 protein [19] D87716_s_at "KIAA0007 gene, partial cds" [20] K03498_xpt1_s_at Pol protein from Human endogenous retrovirus HERV-K22 pol and envelope ORF region./ntype=DNA /annot=CDS [21] M12959_s_at TCRA T cell receptor alpha-chain ------------------------------------------------------------ clusterID = 87 # of genes = 53 -------------------------- [1] AF008937_at GB DEF = Syntaxin-16C mRNA [2] D13900_at Mitochondrial short-chain enoyl-CoA hydratase [3] D16581_at "MTH1 MutT (E. coli) human homolog (8-oxo-7,8-dihydroguanosine triphosphatase)" [4] D23673_at "mRNA, clone HH109 (screened by the monoclonal antibody of insulin receptor substrate-1 (IRS-1))" [5] D26362_at KIAA0043 gene [6] D49738_at Cytoskeleton associated protein (CG22) mRNA [7] D50912_at "KIAA0122 gene, partial cds" [8] D50920_at KIAA0130 gene [9] D86963_at PTB Ribosomal protein L26 [10] HG2874-HT3018_at Ribosomal Protein L39 Homolog [11] HG3627-HT3836_at "Calcium Channel, Voltage-Gated, Beta 1 Subunit, L Type, Alt. Splice 2, Skeletal Muscle Isoform" [12] J02902_at "PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT, ALPHA ISOFORM" [13] L07633_at INTERFERON GAMMA UP-REGULATED I-5111 PROTEIN PRECURSOR [14] L10378_at (clone CTG-B43a) mRNA sequence [15] L18972_at Anonymous gene [16] L40395_at "(clone S20iii15) mRNA, 3' end of cds" [17] M31525_at "HLA-DNA Major histocompatibility complex, class II, DN alpha" [18] M33521_at LARGE PROLINE-RICH PROTEIN BAT3 [19] M58028_at UBE1 Ubiquitin activating enzyme E1 [20] M64571_at MAP4 Microtubule-associated protein 4 [21] U01147_at ABR Active BCR-related gene [22] U02493_at 54 kDa protein mRNA [23] U07695_at HTK Hepatoma transmembrane kinase [24] U09196_at 1.1 kb mRNA upregulated in retinoic acid treated HL-60 neutrophilic cells [25] U09303_at Placenta LERK-2 (EPLG2) mRNA [26] U18300_at DDB2 Damage-specific DNA binding protein 2 (48 kD) [27] U20285_at Gps1 (GPS1) mRNA [28] U28963_at Gps2 (GPS2) mRNA [29] U38175_at HuR RNA binding protein (HuR) mRNA [30] U58087_at Hs-cul-1 mRNA [31] U61263_at Acetolactate synthase homolog mRNA [32] U70735_at GB DEF = 34 kDa mov34 isologue mRNA [33] U79718_at Endonuclease III homolog mRNA [34] U95040_at "Unknown protein mRNA, partial cds" [35] X14448_at ALPHA-GALACTOSIDASE A PRECURSOR [36] X15414_at ALDR1 Aldehyde reductase 1 (low Km aldose reductase) [37] X16316_at GB DEF = VAV oncogene [38] X59417_at PROTEASOME IOTA CHAIN [39] X71874_cds1_at "Proteasome-like subunit MECL-1 gene extracted from H.sapiens genes for proteasome-like subunit (MECL-1), chymotrypsin-like protease (CTRL-1) and protein serine kinase (PSK-H1) last exon" [40] X80497_at "PHOSPHORYLASE B KINASE ALPHA REGULATORY CHAIN, LIVER ISOFORM" [41] Y00486_rna1_at Adenine phosphoribosyltransferase (aprt) gene extracted from Human APRT gene for adenine phosphoribosyltransferase [42] AB006782_at GB DEF = Galectin-9 isoform [43] Z49107_s_at Galectin [44] AC002477_s_at "GB DEF = PAC clone DJ327A19 from Xq25-q26, complete sequence" [45] D49824_s_at GB DEF = HLA-B null allele mRNA [46] Y10807_s_at Suppressor for yeast mutant [47] X77588_s_at "GNAS1 Guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1" [48] L13939_s_at Beta adaptin protein mRNA [49] X57152_rna1_s_at Casein kinase II subunit beta (EC 2.7.1.37) [50] M31211_s_at MYL1 Myosin light chain (alkali) [51] X53390_s_at NUCLEOLAR TRANSCRIPTION FACTOR 1 [52] M12125_at Skeletal beta-tropomyosin [53] X00351_f_at "ACTB Actin, beta" ------------------------------------------------------------ clusterID = 88 # of genes = 5 -------------------------- [1] D29677_at HYPOTHETICAL MYELOID CELL LINE PROTEIN 5 [2] D86956_at KIAA0201 gene [3] J04102_at ETS2 V-ets avian erythroblastosis virus E26 oncogene homolog 2 [4] L08069_at DNAJ PROTEIN HOMOLOG 2 [5] U41654_at RagA protein ------------------------------------------------------------ clusterID = 89 # of genes = 26 -------------------------- [1] AC000061_cds2_at WUGSC:H_133K23.1c gene extracted from Human BAC clone 133K23 from 7q31.2 [2] D28124_at Unknown product [3] D31765_at "KIAA0061 gene, partial cds" [4] D49490_at Protein disulfide isomerase-related protein (PDIR) [5] HG3175-HT3352_at Carcinoembryonic Antigen [6] HG3227-HT3404_at Guanine Nucleotide-Binding Protein Hsr1 [7] HG3578-HT3781_at "Autoimmune Antigen, Thyroid Disease-Related Antigen" [8] HG4243-HT4513_at Zinc Finger Protein Znf155 [9] J04948_at Alkaline phosphatase [10] L07033_at HMGCL 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria) [11] M14158_cds4_at T-cell receptor beta-chain J1.3 gene extracted from Human T-cell receptor germline beta-chain D1.1 and J1.1 to J1.6 genes [12] M96739_at NSCL-1 mRNA sequence [13] U49857_at Transcriptional activator mRNA [14] U66406_at EPLG8 Eph-related receptor tyrosine kinase ligand 8) [15] U70426_at A28-RGS14p mRNA [16] X72790_at GB DEF = Endogenous retrovirus mRNA for ORF [17] X98263_at "M-phase phosphoprotein, mpp6" [18] S68874_s_at PTGER3 Prostaglandin E receptor 3 (subtype EP3) {alternative products} [19] HG3437-HT3628_s_at "Myelin Proteolipid Protein, Alt. Splice 2" [20] M31776_s_at BRAIN NATRIURETIC PEPTIDE PRECURSOR [21] S73885_s_at TFAP4 Transcription factor AP-4 (activating enhancer-binding protein 4)) [22] U09716_s_at ERGIC-53 PROTEIN PRECURSOR [23] U72509_s_at "GB DEF = Alternatively spliced B8 (B7) mRNA, partial sequence" [24] HG2239-HT2324_r_at Potassium Channel Protein (Gb:Z11585) [25] D38024_at "GB DEF = Facioscapulohumeral muscular dystrophy (FSHD) gene region, D4Z4 tandem repeat unit" [26] HG4593-HT4998_at Sodium Channel 1 ------------------------------------------------------------ clusterID = 90 # of genes = 23 -------------------------- [1] AFFX-HUMISGF3A/M97935_MA_at AFFX-HUMISGF3A/M97935_MA_at (endogenous control) [2] AFFX-HUMISGF3A/M97935_MB_at AFFX-HUMISGF3A/M97935_MB_at (endogenous control) [3] AFFX-HUMISGF3A/M97935_3_at AFFX-HUMISGF3A/M97935_3_at (endogenous control) [4] D28915_at Hepatitis C-associated microtubular aggregate protein p44 [5] J02973_rna1_at THBD gene extracted from Human thrombomodulin gene [6] L77701_at COX17 mRNA [7] M22324_at "ANPEP Alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13)" [8] M30818_at "MX2 Myxovirus (influenza) resistance 2, homolog of murine" [9] U03090_at Ca2+-dependent phospholipase A2 mRNA [10] U33429_at K+ channel beta 2 subunit mRNA [11] U40369_rna1_at Spermidine/spermine N1-acetyltransferase (SSAT) gene [12] U45976_at Clathrin assembly protein lymphoid myeloid leukemia (CALM) mRNA [13] U77396_at No cluster in current Unigene and no Genbank entry for U77396 (qualifier U77396_at) [14] U90918_at Clone 23654 mRNA sequence [15] X60673_rna1_at AK3 mRNA for adenylate kinase 3 [16] U12767_at Mitogen induced nuclear orphan receptor (MINOR) mRNA [17] D14826_s_at CREM CAMP responsive element modulator [18] S68271_s_at CREM CAMP responsive element modulator [19] M79463_s_at PML Probable transcription factor PML {alternative products} [20] M97935_s_at SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA [21] X57579_s_at GB DEF = Activin beta-A subunit (exon 2) [22] U50648_s_at Interferon-inducible RNA-dependent protein kinase (Pkr) gene [23] X61755_rna1_s_at HOX3D gene for homeoprotein HOX3D ------------------------------------------------------------ clusterID = 91 # of genes = 19 -------------------------- [1] D87119_at Cancellous bone osteoblast mRNA for GS3955 [2] D87465_at KIAA0275 gene [3] D89077_at Src-like adapter protein mRNA [4] HG4263-HT4533_at Nkr-P1a Protein [5] J04132_at "CD3Z CD3Z antigen, zeta polypeptide (TiT3 complex)" [6] L76465_at 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [7] M30894_at TCRG T cell receptor gamma chain [8] M59807_at NATURAL KILLER CELLS PROTEIN 4 PRECURSOR [9] M85276_at NKG5 PROTEIN PRECURSOR [10] S80335_at ITGB7 Integrin beta-7 subunit [11] U04898_at RORA RAR-related orphan receptor A [12] U20158_at 76 kDa tyrosine phosphoprotein SLP-76 mRNA [13] U60800_at Semaphorin (CD100) mRNA [14] X15882_at "COL6A2 Collagen, type VI, alpha 2" [15] Z19002_at ZINC FINGER PROTEIN PLZF [16] U17969_at EIF5A Eukaryotic translation initiation factor 5A [17] X58072_at GATA3 GATA-binding protein 3 [18] D11327_s_at "PTPN7 Protein tyrosine phosphatase, non-receptor type 7" [19] Y09392_s_at "WSL-LR, WSL-S1 and WSL-S2 proteins" ------------------------------------------------------------ clusterID = 92 # of genes = 25 -------------------------- [1] D78012_at CRMP1 Collapsin response mediator protein 1 [2] D86967_at KIAA0212 gene [3] L77886_at Protein tyrosine phosphatase mRNA [4] M29474_at Recombination activating protein (RAG-1) gene [5] M29877_at "FUCA1 Fucosidase, alpha-L- 1, tissue" [6] U03272_at FBN2 Fibrillin 2 [7] U37122_at ADD3 Adducin 3 (gamma) [8] U88667_at ATP binding cassette transporter (ABCR) mRNA [9] U88964_at HEM45 mRNA [10] X05323_at OX-2 MEMBRANE GLYCOPROTEIN PRECURSOR [11] X07109_at "(clones lambda-hPKC-beta[15,802]) protein kinase C-beta-1 (PRKCB1) mRNA" [12] X62466_at CDW52 CDW52 antigen (CAMPATH-1 antigen) [13] X93512_at GB DEF = Telomeric DNA binding protein (orf2) [14] Z22555_at Encoding CLA-1 mRNA [15] Z46973_at Phosphatidylinositol 3-kinase [16] Z49194_at OBF-1 mRNA for octamer binding factor 1 [17] D26070_at "Type 1 inositol 1,4,5-trisphosphate receptor" [18] L08895_at "MEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)" [19] X02160_at INSR Insulin receptor [20] L14778_s_at "PPP3CA Protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha){alternative products}" [21] HG3730-HT4000_s_at Tyrosine Kinase Syk [22] S57212_s_at "MEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)" [23] M18255_cds2_s_at "PRKACB gene (protein kinase C-beta-2) extracted from Human protein kinase C beta 1 and 2 genes, next to last" [24] Z68228_s_at JUP Junction plakoglobin [25] S79219_s_at PCCA Propionyl-coA carboxylase alpha chain ------------------------------------------------------------ clusterID = 93 # of genes = 3 -------------------------- [1] U59321_at DEAD-box protein p72 (P72) mRNA [2] X89416_at "PPP5C Protein phosphatase 5, catalytic subunit" [3] M32578_at "HLA-DRB1 Major histocompatibility complex, class II, DR beta 1" ------------------------------------------------------------ clusterID = 94 # of genes = 21 -------------------------- [1] D10511_at ACAT1 Acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) [2] D13626_at KIAA0001 gene [3] HG4582-HT4987_at "Glucocorticoid Receptor, Beta" [4] L07597_at "RPS6KA2 Ribosomal protein S6 kinase, 90kD, polypeptide 2" [5] U29195_at NPTX2 Neuronal pentraxin II [6] U38864_at Zinc-finger protein C2H2-150 mRNA [7] U42031_at "54 kDa progesterone receptor-associated immunophilin FKBP54 mRNA, partial cds" [8] U49188_at Placenta (Diff33) mRNA [9] U49395_at Ionotropic ATP receptor P2X5a mRNA [10] U73514_at Short-chain alcohol dehydrogenase (XH98G2) mRNA [11] U81006_at P76 mRNA [12] U90913_at Clone 23665 mRNA sequence [13] X54870_at NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN [14] X61118_rna1_at TTG-2a gene extracted from Human TTG-2 mRNA for a cysteine rich protein with LIM motif [15] X76105_at DAP-1 mRNA [16] X82494_at FBLN2 Fibulin 2 [17] X92475_at ITBA1 protein [18] Y08915_at Alpha 4 protein [19] Y12711_at Putative progesterone binding protein [20] Z70220_at GB DEF = 5'UTR for unknown protein (clone ICRFp507O0882) [21] X90392_at MUSCLE-SPECIFIC DNASE I-LIKE PRECURSOR ------------------------------------------------------------ clusterID = 95 # of genes = 79 -------------------------- [1] AC000064_cds1_at WUGSC:H_RG083M05.2 gene extracted from Human BAC clone RG083M05 from 7q21-7q22 [2] D14686_at AMT Glycine cleavage system protein T (aminomethyltransferase) [3] D25278_at KIAA0036 gene [4] D50857_at DOCK180 protein mRNA [5] D80002_at "KIAA0180 gene, partial cds" [6] HG1649-HT1652_at Elastase 1 [7] HG2264-HT2360_at "Atpase, Ca2+ Transporting, Plasma Membrane 1, Alt. Splice 6" [8] HG2525-HT2621_at "Helix-Loop-Helix Protein Delta Max, Alt. Splice 1" [9] HG3255-HT3432_at Gamma-Aminobutyric Acid (Gaba) A Receptor Beta 2 Subunit [10] HG3566-HT3769_at Zinc Finger Protein (Gb:M88359) [11] HG4332-HT4602_at Zinc Finger Protein Znfpt1 [12] HG4336-HT4606_at Bactericidal Bpi'Gene [13] J00073_at "Alpha-cardiac actin gene, 5' flank and" [14] J02611_at APOD Apolipoprotein D [15] J03756_at SOMATOTROPIN PRECURSOR [16] L11370_at Protocadherin 42 mRNA for abbreviated PC42 [17] L21893_at SLC10A1 Na/taurocholate cotransporting polypeptide [18] L22342_at GB DEF = Nuclear phosphoprotein mRNA [19] L38486_at MFAP4 Microfibrillar-associated protein 4 [20] L39874_at DCTD Deoxycytidylate deaminase [21] L41690_at "TNF receptor-1 associated protein (TRADD) mRNA, 3' end of cds" [22] M55593_at "MMP2 Matrix metalloproteinase 2 (gelatinase A, 72kD gelatinase, 72kD type IV collagenase)" [23] M64108_at "Udulin 1 mRNA, 3' end" [24] M81057_at CPB1 Carboxypeptidase B1 (tissue) [25] M85247_at "GB DEF = Dopamine D1A receptor gene, complete exon 1, and exon 2, 5' end" [26] M89473_at NEUROMEDIN K RECEPTOR [27] M97815_at CRABP2 Cellular retinoic acid-binding protein 2 [28] M99701_at (pp21) mRNA [29] S76992_at VAV2 Vav 2 oncogene [30] S77576_at "GB DEF = ERV9 reverse transcriptase homolog {clone RT18} [human, multiple sclerosis, brain plaques, mRNA Partial, 84 nt]" [31] S78085_at PDCD2 Programmed cell death 2 [32] S78203_at PEPT 2 [33] U00930_at Clone CE29 8.1 (CAC)n/(GTG)n repeat-containing mRNA [34] U11090_at Hydroxyindole-O-methyltransferase promoter B-derived (HIOMT) mRNA [35] U15177_at GB DEF = Cosmid CRI-JC2015 at D10S289 in 10sp13 [36] U19948_at Protein disulfide isomerase (PDIp) mRNA [37] U24152_at P21-activated protein kinase (Pak1) gene [38] U29607_at EIF-2-associated p67 homolog mRNA [39] U31176_at HERV1 mRNA [40] U36798_at CGMP-inhibited cAMP phosphodiesterase mRNA [41] U37251_at ZNF177 KRAB zinc finger protein {alternative products} [42] U37519_at ALDH8 Aldehyde dehydrogenase 8 [43] U45974_at "Phosphatidylinositol (4,5) bisphosphate 5-phosphatase homolog mRNA, partial cds" [44] U57450_at PEDF Pigment epithelium-derived factor [45] U66052_at GB DEF = Clone W2-6 mRNA from chromosome X [46] U78575_at "68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha mRNA, clone PIP5KIa1" [47] U82010_rna1_at Heme A: farnesyltransferase (COX10) gene promoter region and [48] U85943_at mRNA-associated protein mrnp41 mRNA [49] U86409_at "GB DEF = Hyaluronan synthase 3 (HAS3) gene, partial cds" [50] U89336_cds8_at "Unknown gene extracted from Human HLA class III region containing NOTCH4 gene, partial sequence, homeobox PBX2 (HPBX) gene, receptor for advanced glycosylation end products (RAGE) gene, and 6 unidentified cds, complete sequence" [51] U90907_at Clone 23907 mRNA sequence [52] X01388_at APOC3 Apolipoprotein C-III [53] X03072_at GB DEF = Int-1 mammary oncogene [54] X13227_at DAO D-amino-acid oxidase [55] X53331_at MGP Matrix protein gla [56] X61615_at LIFR Leukemia inhibitory factor receptor [57] X64269_at TCF6L1 Transcription factor 6-like 1 (mitochondrial transcription factor 1-like) [58] X69636_at GB DEF = mRNA sequence (15q11-13) [59] X75342_at SHB SHB adaptor protein (a Src homology 2 protein) [60] X76770_at PAP mRNA [61] X79981_at "CDH5 Cadherin 5, VE-cadherin (vascular epithelium)" [62] X84740_at DNA ligase III [63] X90761_at HHKa2 protein [64] X96969_at Urea transporter [65] Y08976_at GB DEF = FEV protein [66] M58026_at CALMODULIN-RELATED PROTEIN NB-1 [67] M97676_at MSX1 Msh (Drosophila) homeo box homolog 1 (formerly homeo box 7) [68] X95808_s_at "Protein encoded by a candidate gene, DXS6673E, for mental retardation" [69] U77846_rna1_at "Elastin gene, partial cds and partial 3'UTR" [70] HG4020-HT4290_s_at Transglutaminase [71] M81181_s_at "ATP1B2 ATPase, Na+/K+ transporting, beta 2 polypeptide" [72] U24056_s_at Inward rectifier K+ channel protein (hirk2) mRNA [73] U31929_s_at DAX-1 [74] S81264_s_at "GB DEF = Hs-TBX2=T-box gene {T-box region} [human, fetal kidney, mRNA Partial, 283 nt]" [75] U31903_s_at CREB-RP (creb-rp) mRNA [76] U54644_s_at TUB Tubby (mouse) homolog [77] M55422_at Krueppel-related zinc finger protein (H-plk) mRNA [78] L05187_at GB DEF = Small proline-rich protein 1 (SPRR1A) gene [79] M30838_at PULMONARY SURFACTANT-ASSOCIATED PROTEIN A PRECURSOR ------------------------------------------------------------ clusterID = 96 # of genes = 36 -------------------------- [1] D10202_at PTAFR Platelet activating factor receptor [2] D26579_at Transmembrane protein [3] L00352_at LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR [4] L05424_cds2_at CD44 gene (cell surface glycoprotein CD44) extracted from Human hyaluronate receptor (CD44) gene [5] L06419_at PLOD Lysyl hydroxylase [6] L19872_at AHR AH-receptor [7] L24564_at Rad mRNA [8] M19645_at 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR [9] M21121_at SCYA5 Small inducible cytokine A5 (RANTES) [10] M23294_at HEXB Hexosaminidase B (beta polypeptide) [11] M63262_at "GB DEF = 5-lipoxygenase activating protein (FLAP) gene, exon 5" [12] M63959_at LRPAP1 Low density lipoprotein-related protein-associated protein 1 (alpha-2-macroglobulin receptor-associated protein 1 [13] M92357_at B94 PROTEIN [14] M93221_at M6PR Mannose receptor [15] U39573_at Salivary peroxidase mRNA [16] U60644_at HU-K4 mRNA [17] U64998_at GB DEF = Ribonuclease k6 precursor gene [18] U70663_at Zinc finger transcription factor hEZF (EZF) mRNA [19] U73960_at ADP-ribosylation factor-like protein 4 mRNA [20] U85767_at Myeloid progenitor inhibitory factor-1 MPIF-1 mRNA [21] X05908_at ANX1 Annexin I (lipocortin I) [22] X06256_at "ITGA5 Integrin, alpha 5 (fibronectin receptor, alpha polypeptide)" [23] X53416_at FLN1 Filamin 1 (actin-binding protein-280) [24] X62654_rna1_at ME491 gene extracted from H.sapiens gene for Me491/CD63 antigen [25] X78706_at CRAT Carnitine acetyltransferase [26] X90858_at Uridine phosphorylase [27] X93920_at Protein-tyrosine-phosphatase (tissue type: foreskin) [28] X96584_at NOV Nephroblastoma overexpressed gene [29] Z49269_at Chemokine HCC-1 [30] Y07909_at B4B [31] M13452_s_at LMNA Lamin A [32] X05130_s_at "P4HB Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)" [33] Z31690_s_at "LIPA Lipase A, lysosomal acid, cholesterol esterase" [34] U43916_s_at B4B [35] Y00451_s_at "ALAS1 Aminolevulinate, delta-, synthase 1" [36] L35594_at Autotaxin mRNA ------------------------------------------------------------ clusterID = 97 # of genes = 12 -------------------------- [1] AFFX-HUMRGE/M10098_3_at AFFX-HUMRGE/M10098_3_at (endogenous control) [2] D16532_at VLDLR Very low density lipoprotein receptor [3] D79994_at "KIAA0172 gene, partial cds" [4] HG4638-HT5050_at Spliceosomal Protein Sap 49 [5] L19605_at ANX11 Annexin XI (56kD autoantigen) [6] M57609_at GLI3 PROTEIN [7] M92934_at CTGF Connective tissue growth factor [8] U09284_at PINCH protein mRNA [9] U10492_at MEOX1 Homeobox protein mox1 [10] U24576_at "Breast tumor autoantigen mRNA, complete sequence" [11] X69950_s_at WT1 Wilms tumor 1 [12] M77348_rna1_s_at Pmel 17 mRNA ------------------------------------------------------------ clusterID = 98 # of genes = 8 -------------------------- [1] D86983_at "KIAA0230 gene, partial cds" [2] L36645_at Receptor protein-tyrosine kinase (HEK8) mRNA [3] S53911_at CD34 CD34 antigen (hemopoietic progenitor cell antigen) [4] U59423_at Mad-related protein MADR1 mRNA [5] X58288_at "PTPRM Protein tyrosine phosphatase, receptor type, mu polypeptide" [6] X83441_at DNA ligase IV [7] L32832_s_at Zinc finger homeodomain protein (ATBF1-A) mRNA [8] M17254_s_at TRANSFORMING PROTEIN ERG ------------------------------------------------------------ clusterID = 99 # of genes = 59 -------------------------- [1] D28137_at RPS11 Ribosomal protein S11 [2] D38555_at KIAA0079 gene [3] D42041_at "KIAA0088 gene, partial cds" [4] D63475_at KIAA0109 gene [5] D87953_at RTP [6] D87989_at UDP-galactose transporter related isozyme 1 [7] D89052_at Proton-ATPase-like protein [8] HG3514-HT3708_at "Tropomyosin Tm30nm, Cytoskeletal" [9] L09604_at INTESTINAL MEMBRANE A4 PROTEIN [10] L25080_at ARH12 Aplysia ras-related homolog 12 [11] L76191_at Interleukin-1 receptor-associated kinase (IRAK) mRNA [12] M11147_at "FTL Ferritin, light polypeptide" [13] M15182_at "GUSB Glucuronidase, beta" [14] M22995_at "RAP1A RAP1A, member of RAS oncogene family" [15] M31013_at "MYH9 Myosin, heavy polypeptide 9, non-muscle" [16] M34539_at FKBP1 FK506-binding protein 1 (12kD) [17] M62762_at ATP6C Vacuolar H+ ATPase proton channel subunit [18] M69066_at MSN Moesin [19] M75099_at FRAP FK506 binding protein 12-rapamycin associated protein [20] U05875_at Clone pSK1 interferon gamma receptor accessory factor-1 (AF-1) mRNA [21] U15555_at "Serine palmitoyltransferase (LCB2) mRNA, partial cds" [22] U32645_at Myeloid elf-1 like factor (MEF) mRNA [23] U44772_at Palmitoyl protein thioesterase mRNA [24] U46692_rna1_at Cystatin B gene [25] U49278_at "Putative DNA-binding protein mRNA, partial cds" [26] U52101_at YMP mRNA [27] U56418_at Lysophosphatidic acid acyltransferase-beta mRNA [28] U83115_at "Non-lens beta gamma-crystallin like protein (AIM1) mRNA, partial cds" [29] U83463_at Scaffold protein Pbp1 mRNA [30] U91932_at Clathrin coat assembly protein-like [31] U93205_at Nuclear chloride ion channel protein (NCC27) mRNA [32] V00572_at PGK1 Phosphoglycerate kinase 1 [33] X03656_rna1_at G-CSF protein gene extracted from Human gene for granulocyte colony-stimulating factor (G-CSF) [34] X04106_at "CAPN4 Calpain, small polypeptide" [35] X04828_at "GNAI2 Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2" [36] X15187_at TRA1 Homologue of mouse tumor rejection antigen gp96 [37] X57398_at "NME1 Non-metastatic cells 1, protein (NM23A) expressed in" [38] X74104_at "SSR2 Signal sequence receptor, beta" [39] X75861_at TEGT Testis enhanced gene transcript [40] X81817_at 6C6-Ag mRNA [41] X82456_at MLN50 mRNA [42] X95735_at Zyxin [43] X97074_at EEF2 Eukaryotic translation elongation factor 2 [44] Y00282_at RPN2 Ribophorin II [45] Y00433_at GPX1 Glutathione peroxidase 1 [46] Z12830_at "SSR1 Signal sequence receptor, alpha" [47] Z68129_cds1_at H-IDH gamma gene (NAD(H)-specific isocitrate dehydrogenase gamma-subunit precursor) extracted from H.sapiens IDH gamma gene and TRAP delta gene [48] J04182_at LAMP1 Lysosome-associated membrane protein 1 [49] L11284_at DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 [50] D78577_s_at "YWHAH Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide" [51] U19713_s_at Allograft inflammatory factor-1 (AIF-1) mRNA [52] U19247_rna1_s_at Interferon-gamma receptor alpha chain gene [53] HG2815-HT2931_s_at "Myosin, Light Chain, Alkali, Smooth Muscle (Gb:U02629), Non-Muscle, Alt. Splice 2" [54] HG4264-HT4534_s_at Guanine Nucleotide-Binding Protein Rab5c-Like Protein [55] M32304_s_at TIMP2 Tissue inhibitor of metalloproteinase 2 [56] L12711_s_at TKT Transketolase (Wernicke-Korsakoff syndrome) [57] U04285_s_at "LIPA Lipase A, lysosomal acid, cholesterol esterase" [58] Z69043_s_at mRNA translocon-associated protein delta subunit precursor [59] X12953_at "RAB2 RAB2, member RAS oncogene family" ------------------------------------------------------------ clusterID = 100 # of genes = 8 -------------------------- [1] D50915_at KIAA0125 gene [2] M91438_at GB DEF = Kazal-type serine proteinase (HUSI-II) gene [3] U00952_at Clone A9A2BRB7 (CAC)n/(GTG)n repeat-containing mRNA [4] S80267_s_at "P72syk {G insertion nucleotide 92} [human, Jurkat E6-1 J.CaM1 cells, mRNA Partial Mutant, 1909 nt]" [5] X52282_s_at GB DEF = Atrial natriuretic peptide clearance receptor (ANP-C receptor) [6] U66061_cds3_at "TRY8 gene (trypsinogen E) extracted from Human germline T-cell receptor beta chain TCRBV17S1A1T, TCRBV2S1, TCRBV10S1P, TCRBV29S1P, TCRBV19S1P, TCRBV15S1, TCRBV11S1A1T, HVB relic, TCRBV28S1P, TCRBV34S1, TCRBV14S1, TCRBV3S1, TCRBV4S1A1T, TRY4, TRY5, TRY6, TRY7, TRY8, TCRBD1, TCRBJ1S1, TCRBJ1S2, TCRBJ1S3, TCRBJ1S4, TCRBJ1S5, TCRBJ1S6, TCRBC1, TCRBD2, TCRBJ2S1, TCRBJ2S2, TCRBJ2S3, TCRBJ2S4, TCRBJ2S5, TCRBJ2S6, TCRBJ2S7, TCRBC2, TCRBV20S1A1N2 genes from bases 452324 to 684973 (section 3 of 3)" [7] M22612_f_at "PRSS1 Protease, serine, 1 (trypsin 1)" [8] X71345_f_at "PRSS3 Protease, serine, 3 (trypsin 3)" ------------------------------------------------------------