3: What are the parts of ATP

Shaken formulation:

What is/are the part of a ATP ?

Answer

The part of the ATP is/are:

Question in KM

Template

What is/are the <slot> of <instance>?

Parameters

SLOT has-part
INSTANCE _ATP999

Code

	 
("p4: What is the <slot> of a <instance>?"
 (defun answer-p4-data0 (slot instance)
   `(answer
     (question-type p4)
     (slot ,slot)
     (instance ,instance)
     (values ,(km `#$(the ,SLOT of ,INSTANCE) :fail-mode 'fail)))))

Raw Answer

((question-type p4) (slot has-part) (instance _atp999)
 (values (_triphosphate1002 _adenosine1003
          _nitrogenous-base1005 _pentose1004
          _monophosphate1008 _monophosphate1007
          _monophosphate1006))
 (explanations
  ((_atp999 has-part _triphosphate1002
    ((a triphosphate with
      (object-of
       ((a be-attached-to with
         (object
          ((the ribonucleoside has-part of _atp999)))
         (site
          (((the carbon-atom has-part of
             (the pentose has-part of
              (the ribonucleoside has-part of _atp999)))
            called Carbon-5)
           ((the oxygen-atom has-part of
             ((the monophosphate has-part of
               (the triphosphate has-part of _atp999))
              called Phosphate-1))
            called Oxygen-1)))
         (instrument ((a covalent-co-bond)))))))
     (a triphosphate with
      (object-of
       ((a be-attached-to with
         (object
          ((the adenosine has-part of _atp999
            (@ atp has-part triphosphate object-of
             be-attached-to object))))
         (site
          (((the carbon-atom has-part of
             (the ribose has-part of
              (the adenosine has-part of _atp999)))
            called Carbon-5
            (@ atp has-part triphosphate object-of
             be-attached-to site))
           ((the oxygen-atom has-part of
             ((the monophosphate has-part of
               (the triphosphate has-part of _atp999))
              called Phosphate-1))
            called Oxygen-1
            (@ atp has-part triphosphate object-of
             be-attached-to site))))
         (instrument
          ((a covalent-co-bond
            (@ atp has-part triphosphate object-of
             be-attached-to instrument))))
         (@ atp has-part triphosphate object-of))))
      (@ atp has-part))))
   (_atp999 has-part _adenosine1003
    ((a ribonucleoside) (a adenosine (@ atp has-part))))
   (_atp999 has-part _nitrogenous-base1005
    ((a nitrogenous-base with
      (instance-of
       ((possible-values purine pyrimidine))))))
   (_atp999 has-part _pentose1004 ((a pentose)))
   (_atp999 has-part _monophosphate1008
    ((a monophosphate called Phosphate-3)))
   (_atp999 has-part _monophosphate1007
    ((a monophosphate called Phosphate-2 with
      (object-of
       ((a be-attached-to with
         (object
          (((the has-part of _atp999) called Phosphate-2)))
         (site
          ((the phosphorus-atom has-part of
            ((the monophosphate has-part of _atp999) called
             Phosphate-1))
           ((the oxygen-atom has-part of
             ((the monophosphate has-part of _atp999)
              called Phosphate-2))
            called Oxygen-1)))
         (instrument ((a phosphoanhydride-bond)))))))))
   (_atp999 has-part _monophosphate1006
    ((a monophosphate called Phosphate-1 with
      (object-of
       ((a be-attached-to with
         (object
          (((the has-part of _atp999) called Phosphate-2)))
         (site
          ((the phosphorus-atom has-part of
            ((the monophosphate has-part of _atp999) called
             Phosphate-1))
           ((the oxygen-atom has-part of
             ((the monophosphate has-part of _atp999)
              called Phosphate-2))
            called Oxygen-1)))
         (instrument ((a phosphoanhydride-bond))))))))))))

Explanation

The Triphosphate is part of the ATP The Adenosine is part of the ATP The Nitrogenous-Base is part of the ATP The Pentose is part of the ATP The Monophosphate is part of the ATP The Monophosphate is part of the ATP The Monophosphate is part of the ATP

Terms

Terms Definitions
  the ATP       An instance of ATP
  the Adenosine       An instance of Adenosine
  the Monophosphate       An instance of Monophosphate
  the Monophosphate       An instance of Monophosphate
  the Monophosphate       An instance of Monophosphate
  the Nitrogenous-Base       An instance of Nitrogenous-Base
  the Pentose       An instance of Pentose
  the Triphosphate       An instance of Triphosphate
 ATP   Adenosine triphosphate. The principle carrier of Chemical-Energy in the Cell. The terminal Phosphate groups are highly reactive in the sense that their hydrolysis, or transfer to another molecule, takes place with release of a large amount of free energy. Alberts:ECB:G-2.
 Adenosine   A nucleoside containing adenine that when joined with a monophosphate group forms one of the four nucleotides in RNA. As a nucleoside triphosphate it is the principle energy yielding molecule in the cell. Souther.
 Be-Attached-To   one object attached to another
 Carbon-Atom   The fundamental building block of living systems. Souther.
 Covalent-CO-Bond   Chemical bond between a carbon and a oxygen. Souther.
 Monophosphate   A compound containing a single phosphate group. Souther.
 Nitrogenous-Base   A base containing nitrogen.
 Oxygen-Atom   An element that is found free as a colorless tasteless odorless gas in the atmosphere of which it forms about 21 percent or combined in water, in most rocks and minerals, and in numerous organic compounds, that is capable of combining with all elements except the inert gases, is active in physiological processes, and is involved especially in combustion processes. Websters 9th NCD:843.
 Pentose   A five-carbon monosaccharide. The pentoses deoxyribose and ribose are present in DNA and RNA respectively. Lodish:MCB:G-13.
 Phosphoanhydride-Bond   A chemical bond formed between two phosphate groups. Souther.
 Phosphorus-Atom   A solid, nonmetallic element that is a necessary constituent for bones and nerves, and as a phosphate forms high-energy bonds that provide the energy for all biosynthetic reactions. Souther.
 Purine   A nitrogenous compound containing two fused heterocyclic rings. Two purines, adenine and guanine, commonly are found in DNA and RNA. Lodish:MCB:G-14.
 Pyrimidine   A nitrogenous compound containing one heterocyclic ring. Two pyrimidines, cytosine and thymine, are commonly found in DNA. Lodish:MCB:G-14.
 Ribonucleoside   Compound composed of a purine or pyrimidine base linked to a ribose sugar. Alberts:ECB:G-13.
 Ribose   A Ribose which forms the carbohydrate moiety of nucleotides, both when free and when incorporated into RNA. Souther.
 Triphosphate   A compound containing a three phosphate groups in a chain. Souther.
 called   No Textual Definition
 has-part   the parts that comprise a whole.
 instance-of   No Textual Definition
 instrument   the entity that is used (by the agent if there is one) to perform an event.
 object   the entity that is acted upon by an Event. The main passive participant in the Event.
 object-of   No Textual Definition
 site   the specific place of some effect of an event, as opposed to the locale of the event itself

SHAKEN - Unpublished Copyright © 1999-2001, SRI Team