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Interface Summary | |
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Metric | Metric is a distance oracle. |
WeightMatrix | A WeightMatrix is the substitution matrix of an Alphabet of Symbol
objects. |
Class Summary | |
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CountedMetric | Wrapper around a base Metric that counts the invocations of
Metric.getDistance(IndexObject,IndexObject) . |
ImageMetric | Computes the distance between images. |
LMetric | This class computes the L family distance function on two vectors. |
MSMetric | MSDataMetric implements the Metric interface. |
MSMSConstants | Constant static default values for building indices on mass spectrometer data Code uses these as default, "tolerance" etc. |
MSMSMetric | MSMSMetric is an implementation of a fuzzy cosine distance metric for comparing tandem spectra signatures. |
SequenceFragmentMetric | Computes the distance between two Fragment s. |
SymmetricSubstitutionWeightMatrix | Implements a WeightMatrix by providing a symmetric substitution matrix of double
distances for a given Alphabet . |
WHDGlobalSequenceFragmentMetric | Computes global alignment on Fragment s with Weighted Hamming Distance. |
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