Instructor
Prof. Daniel P.
Miranker
Office: TAY 3.140B
Office Hours: Mon 2-3, Thu 11-12
Email: miranker@cs.utexas.edu
Teaching Assistants
Rui Mao (rmao@cs.utexas.edu)
Office Hours: Mon 3-4, Thu 3-4 at TAY 3.140A
Last year's T.A, Weijia Xu (xwj@cs.utexas.edu) will be assisting.
Very Tentative Lecture Schedule
Rational Rose (Installation, Documentation, Links etc.)
Homework 2, Suggested solution: ddl file, mdl file(RationalRose file)
Homework 3, Suggested solution( ddl file, mdl file)
Homework 4, Suggested solution
Homework 5, EditDistance.java, Suggested solution, GlobalAlignment.java
| Milestone | Due date | Instructions | Solution/Grading |
| Milestone 1 | Wed. Apr 11 | Database Setup | solution |
| Milestone 2 | Sat. Apr 14 | JDBC, bacil-gb.txt, ecoli-gb.txt, ecoli-sp.txt, human-gb.txt, yeast-gb.txt, Postgres.java, ProteinLoader.java, SmithWaterman.java, FastaSequence.java, Blosum.java, SimpleChaining.java, InvalidAlphabetException.java |
Milestone2.java, note |
| Milestone 3 | Fri. Apr 20 | Rosetta Relation Inference | screenshot |
| Milestone 4 | Thu. Apr 26 | Gene Ontology and Rosetta Relation | Milestone 1-4 Solution instrucion |
| Milestone 5 | Wed. May 2 | Demo, source |
