To submit your project, first create a directory on a CS linux lab machine that contains your report, your solution trace files, and only the .java files that you have modified or created. You should make sure that by copying these files into a clean copy of the ir project, your code still compiles and runs; otherwise, you've forgotten something and your grade will be penalized.
Go to the parent directory and use the turnin program from a command prompt:
turnin --submit ccor proj# myProject
(where 'myProject' is the name of the directory where you have placed your files and # is 1 or 2)
turnin --list ?? proj#
man -M /p/man turnin