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NSF DEB 0733029

• Large-Scale Simultaneous Multiple Alignment and Phylogeny Estimation
  Collaborators: University of Georgia, University of Kansas, University of Nebraska
  2007-2012, $1.7 Million

NSF ITR 0331453

• Building the Tree of Life -- A National Resource for Phyloinformatics and Computational Phylogenetics
  Collaborators: Florida State University, UC Berkeley, UC San Diego, University of New Mexico
  2003-2009, $11.6 Million
  CIPRES webpage

NSF ITR BCS 0312830

• Algorithms for Inferring Reticulate Evolution in Historical Linguistics
  Collaborators: Rice University, UC Berkeley, University of Pennsylvania
  2003-2009, $344,517
  Computational Phylogenetics for Historical Linguistics webpage

NSF ITR/AP 0121680

• Reconstructing Complex Evolutionary Histories
  Collaborators: University of New Mexico
  2001-2009, $1,707,458
  Complex Evolution Project webpage