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DynaDup

Overview

  • DynaDup is a Java program for estimating species trees given a set of rooted gene trees, minimizing duplications or duplication and losses (approximately). The algorithm used is described in:

    S. Bayzid, S. Mirarab, T. Warnow, "Optimal Species Trees under Gene Duplication and Loss", PSB 2013, in press.

Download

Version 2.2.4:
Binary (jar file): version 2.2.4
Source code: github repository.
Older versions: history

Usage

Please refer to the README file for usage and other information.

Acknowledgment

Dynadup is build based on code from PhyloNet.

Publication

S. Bayzid, S. Mirarab, T. Warnow, "Optimal Species Trees under Gene Duplication and Loss", PSB 2013, in press.
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