|Introduction||Image Enhancement||Particle Picking||Classification||Reconstruction||3D Image Segmentation||Secondary Structure||References||Acknowledgements|
- Image Enhancement/Filtering
- Zeyun Yu and Chandrajit Bajaj, “A Fast and Adaptive Algorithm for Image Contrast Enhancement”, Proceedings of 2004 IEEE International Conference on Image Processing (ICIP’04), pp. 1001-1004, Singapore, October 2004.
- Zeyun Yu and Chandrajit Bajaj, “Anisotropic Vector Diffusion in Image Smoothing”, Proceedings of the 9th IEEE International Conference on Image Processing (ICIP’02), Vol. 1, pp. 828-831, Rochester, New York, September 2002.
- Image Skeletonization
- Zeyun Yu and Chandrajit Bajaj, “A Segmentation-Free Approach for Skeletonization of Gray-Scale Images via Anisotropic Vector Diffusion”, Proceedings of 2004 IEEE International Conference on Computer Vision and Pattern Recognition (CVPR’04), Vol. 1, pp. 415-420, Washington DC, June 2004.
- Image Segmentation
- Zeyun Yu and Chandrajit Bajaj, “Automatic Ultra-structure Segmentation of Reconstructed Cryo-EM Maps of Icosahedral Viruses”, IEEE Transactions on Image Processing: Special Issue on Molecular and Cellular Bioimaging, Vol. 14, No. 9, pp. 1324-1337, September 2005.
- Zeyun Yu and Chandrajit Bajaj, “Image Segmentation Using Gradient Vector Diffusion and Region Merging”, Proceedings of the 16th International Conference on Pattern Recognition (ICPR’02), Vol. 2, pp. 941-944, Quebec, Canada, August 2002.
- Zeyun Yu and Chandrajit Bajaj, “Normalized Gradient Vector Diffusion and Image Segmentation”, Proceedings of the 7th European Conference on Computer Vision (ECCV’02), Lecture Notes in Computer Science, Vol. 2352, pp. 517-530, Copenhagen, Denmark, May 2002.
- Matthew L. Baker, Zeyun Yu, Chandrajit Bajaj, Wah Chiu, “Automated Segmentation of Molecular Subunits in Electron Cryomicroscopy Density Map”, Journal of Structural Biology. (in submission).
- Particle Picking
- Zeyun Yu and Chandrajit Bajaj, “Detecting Circular and Rectangular Particles Based on Geometric Feature Detection in Electron Micrographs”, Journal of Structural Biology, Vol. 145, No. 1-2, pp. 168-180, January 2004.
- Zeyun Yu and Chandrajit Bajaj, “A Gravitation-Based Clustering Method and Its Applications in 3D Electron Microscopy Imaging”, Proceedings of the 5th International Conference on Advances in Pattern Recognition (ICAPR’03), pp. 137-140, Calcutta, India, December 2003.
- Review Articles
- Chandrajit Bajaj and Zeyun Yu, “Geometric Processing of Reconstructed 3D Maps of Molecular Complexes”, in Handbook of Computational Molecular Biology, Edited by S. Aluru, Chapman & Hall/CRC Press, Computer and Information Science Series, October 2005.
- Chandrajit Bajaj, Zeyun Yu, and Manfred Auer, “Volumetric Feature Extraction and Visualization of Tomographic Molecular Imaging”, Journal of Structural Biology, Vol. 144, No. 1-2, pp. 132-143, October 2003.
- Computational Tools for Macromolecular Structure Determination and Visualization (pdf).