Software

Software DiagramGraphical User Tools

  • TexMol – Molecular visualization and computation.
  • VolumeRover (a.k.a VolRover) – Scalable Image Processing and Visualization Tool.
  • VolRoverN – Geometric and electrophysiological neuronal simulation and visualization package.
  • LBIE – Level Set Boundary-Interior-Exterior Meshing Tool.
  • Prism – Geometric modeling using algebraic patches.
  • GANITH – Algebraic geometry toolkit.

Software Libraries and Command-Line Utilities

  • MolSurf – Molecular surface generation and manipulation.
  • MolEnergy – Molecular energetics computation.
  • DPG – Dynamic packing grids.
  • SSEP – Secondary structure elucidation package.
  • Pocket/Tunnel – Protein pocket/tunnel extractor.
  • QHM – Quality Quadrilateral/Hexahedral Mesh Generator.
  • QTM – Quality Triangular/Tetrahedral Mesh Generator.
  • QMDM – Quality Multi-Domain Meshing with Gap
  • QMDMNG – Quality Multi-Domain Meshing with No Gap
  • GPU Renderer – Surface/Volume Rendering Packages.
  • Shastra – X11 Based Scientific Toolkits.
  • Tracing/Tiling/Tetra – Arbitrary Topology Shape Reconstruction Library from Planar Cross Sections.
  • PFCorr – Polar Fourier Correlation.
  • PF2Fit – Polar Fast Fourier Rigid-body Fitting.
  • PF3Fit – Polar Fast Fourier Flexible Fitting.
  • PMEOPA – Parallel Molecular Energetics.
  • PGBFOPA – Parallel Generalized Born Force.

Server Based Codes

  • F2Dock – Protein docking software.
  • TRLIB – Texture-based Rendering Library.
  • ParIso – Fast Parallel Isosurface Rendering Library.
  • MTD – Server-Client based Multi-Tiled Display Library.
  • PVRC – Parallel Volume Ray Casting Library.

Earlier Codes

  • MiniTexMol – Simplified Molecular Visualization Plugin for Web.
  • Mini3DTexViewer – 3D Texture-based Volume Visualization Plugin for Web.