Rui Mao

Ph.D. Candidate
Department of Computer Sciences
University of Texas at Austin
[Personal & Contact]  [Education]  [Research]  [Publications]  [Teaching]  [Honors]  [Programming / Software Expertise]  [Professional Activities]     

Personal & Contact [top]

Gender:Male
Citizenship:P.R.China
Office:Taylor Hall 3.140A, UT Austin Campus (24th Street & Speed Way) , +1 (512) 471·9540
Mailing Address:7201 Wood Hollow DR., APT447, Austin, Texas, 78731, USA
Email:rmao@cs.utexas.edu
Homepage:http://www.cs.utexas.edu/~rmao

Education [top]

Ph.D. in Computer Sciences, May, 2007 (expected), University of Texas at Austin

M.S. in Statistics, December, 2006 (expected). University of Texas at Austin

M.S. in Computer Science, July, 2000, University of Science and Technology of China (USTC)

B.E. in Computer Science, July, 1997, University of Science and Technology of China

Research [top]

Area of interest: Database indexing for similarity search, dataming, bioinformatics, information retrieval

11/2001-Present: Distance-based Indexing and Applications in Bioinformatics

06/2006-Present: The Morphster Project

05/2001-11/2001: Clustering web search results

03/1997-01/2001: Member of  National High Performance Computing Center (NHPCC), Hefei, Anhui, China

01/1999-01/2001: The Intelligent Flood-Control & Anti-Pollution Scheduling System of Huaihe River

03/1997-09/1998: The Flood Prediction and Reservoir Cluster Scheduling System of Huaihe River

Publications [top]

  1. Rui Mao, Weijia Xu, Willard S. Willard, Smriti R. Ramakrishnan and Daniel P. Miranker. "MoBIoS Index: Support Distance-Based Queries in Bioinformatics". In the proceedings of the 2006 Workshop on Intelligent Computing & Bioinformatics of the Chinese Academy of Sciences (WICB2006). page 147-152, November 12-14, 2006. Hefei, Anhui, China.
  2. Weijia Xu, Rui Mao, Shu Wang, and Daniel P. Miranker. "On integrating peptide sequence analysis and relational distance-based indexing". In the proceedings of the IEEE 6th Symposium on Bioinformatics and Bioengineering (BIBE06). Pages 27-34, Oct. 16-18, 2006. Arlington, VA, USA
  3. Ramakrishnan, Smriti R., Rui Mao, Aleksey A. Nakorchevskiy, John T. Prince, Willard S. Willard, Weijia Xu, Edward M. Marcotte, and Daniel P. Miranker. "A fast coarse filtering method for protein identification by mass spectrometry." Bioinformatics, 22(12):1524-1531; doi:10.1093/bioinformatics/btl118. 2006.
  4. Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker. "An Assessment of a Metric Space Database Index to Support Sequence Homology". International Journal on Artificial Intelligence Tools, Vol. 14, No. 5 (2005) 867-885, October 2005.
  5. Rui Mao, Qasim Iqbal, Wenguo Liu, Daniel P. Miranker. "Case Study: Distance-Based Image Retrieval in the MoBIoS DBMS". In the Proceedings of The 5th International Conference on Computer and Information Technology (CIT2005), page 49-55, September 21-23, 2005, Shanghai, China.
  6. Rui Mao, Weijia Xu, Smriti Ramakrishnan, Glen Nuckolls, Daniel P. Miranker. "On Optimizing Distance-Based Similarity Search for Biological Databases". In the Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference, Page 351-361, August 8-11, 2005, Stanford University, California, USA.
  7. Daniel P. Miranker, Willard J Briggs, Rui Mao, Shulin Ni and Weijia Xu. "Biosequence Use Cases in MoBIoS SQL". IEEE Data Engineering Bulletin, 27(3): 3-11, September 2004.
  8. Daniel Miranker, Weijia Xu, Rui Mao. "MoBIoS: a Metric-Space DBMS to Support Biological Discovery". Appeared as short paper In the Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), page 241-244, July 9-11, 2003, Cambridge, MA, USA. IEEE Computer Society 2003, ISBN 0-7695-1964-4.
  9. Rui Mao, Weijia Xu, Neha Singh and Daniel P. Miranker. "An Assessment of a Metric Space Database Index to Support Sequence Homology". In the Proceedings of the 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), page 375-382, March 10-12, 2003, Bethesda, MD, USA. IEEE Computer Society 2003, ISBN 0-7695-1907-5. (This paper was selected as one of the ten best papers to be re-published in IJAIT, 2005)
  10. Rui Mao, Liusheng Huang and Dajie Xu, "Algorithm and Implementation of the Multi-Reservoir Optimal Scheduling on Huaihe River", Mini-Micro Systems (ISSN1000-1220), June, 2000. Vol. 21, No. 6, page 603-607.
  11. Rui Mao, Liusheng Huang, Huaping Chen and Guoliang Chen. "The Reservoir Cluster Optimal Scheduling Algorithm of the Huaihe River and Its Parallel Implementation," In the proceedings of The Fourth International Conference on High-Performance Computing in the Asia-Pacific Region (HPC00). Volume 2, page 1162-1164. May 14 - 17, 2000, Beijing, China.
  12. Rui Mao, Liusheng Huang, Chen Li, Lu Han, Huaping Chen and Guoliang Chen. "Design of Intelligent Flood Control & Antipollution Scheduling System on Huaihe River Basin", COMPUTER ENGINEERING AND APPLICATIONS (ISSN 1002-8331), April, 2000, Vol. 36, No. 4, page 161-164.
  13. Hui Xu, Jinbiao Xin, Shijin Xu, Liusheng Huang, Huaping Chen and Rui Mao, "The Dynamic Programming Solution to the Multiple Large Reservoir Scheduling of Huaihe River Basin", Hydrology (ISSN:1000-0852), February, 2000, Vol. 20, No. 2, page 22-25.
  14. Rui Mao, Liusheng Huang, Dajie Xu, Huaping Chen and Guoliang Chen, "Design and Implementation of the Flood Prediction and Reservoir Cluster Scheduling System of Huaihe River", Computer Engineering (ISSN 1000-3428), November, 1999, Vol. 25, No. 11, page 71 - 72.
  15. Huaping Chen, Hong An, Rui Mao, Liusheng Huang and Guoliang Chen, "Design and Implementation of The Disaster Control Intelligent Information System of Huaihe River", Progress of Intelligent Computer Interface and Application 99 ¨C the Proceedings of the Fourth Conference on Computer Intelligent Interface and Intelligent application of China. Editors in chief: Wen Gao and Yueliang Qian. China Publishing House of Electronics Industry (PHEI). August 1999, Taiyuan, China. Page 368-372.
  16. Huaping Chen, Liusheng Huang, Rui Mao and Guoliang Chen, "Design and Implementation of The Optimization Multi-Reservoir Scheduling of Huaihe River", High Technology Letters (ISSN:1002-0470), July, 1999, Vol. 9, No. 7, page 25-28.
  17. Rui Mao, Liusheng Huang, Huaping Chen and Dajie Xu, "Multi-Reservoir Optimization Scheduling Algorithm and its parallel implementation of up-and mid-stream of Huaihe River", The Proceedings of the Workshop for Dawning Tianchao-1000 Computer Users. October, 1998, Beijing, China. page 156-164. Published by National High Performance Computer Center (NHPCC), China.

Teaching Experiences [top]

Programming / Software Expertise [top]

Professional Activities [top]

Honors [top]