Package mobios.type

Interface Summary

Symbol

Interface Symbol is implemented for the characters of a biosequence alphabet.

Class Summary

Alphabet	An alphabet represents a collection of Symbols for a specific Sequence type.
DNA	A DNA is a compact representation of a DNA sequence.
DoubleIndexObjectPair	Wraps a double and an IndexObject.
DoubleVector	This class represents space vectors, where each element is a double.
Fragment	TODO
Image	TODO This is the key of Image.
IndexObject
Pair	A simple wrapper to wrap two object together.
Peptide	A Peptide is a compact representation of a AminoAcids sequence(Peptide).
RNA	A compact representation of an RNA sequence.
Sequence	A compact representation of sequences of small alphabets whose indices fit within a valid byte range.
Spectra	Represents a spectra.
TandemSpectra	TandemSpectra represents a given spectra and its attached precursor mass.

Enum Summary

DNA.DNASymbol
Peptide.AminoAcid
RNA.RNASymbol	TODO