mobios.dist
Interface WeightMatrix
- All Superinterfaces:
- Serializable
- All Known Implementing Classes:
- SymmetricSubstitutionWeightMatrix
public interface WeightMatrix
- extends Serializable
A WeightMatrix
is the substitution matrix of an Alphabet
of Symbol
objects. It defines the distance between each pair of Symbol
s of the
Alphabet
. Using a WeightMatrix
, a weighted edit distance metric can be defined
onSequence
or Fragment
objects.
- Version:
- 2004.03.02
- Author:
- Jack, Rui Mao, Weijia Xu, Willard
getAlphabet
Alphabet getAlphabet()
- Returns:
- the
Alphabet
over which this matrix is defined.
getDistance
double getDistance(Symbol one,
Symbol two)
- Returns:
- the distance between two
Symbol
objects in the Alphabet
over which
this matrix is defined.
(C) 2002 - 2006 The MoBIoS Group