mobios.type
Enum DNA.DNASymbol

java.lang.Object
  java.lang.Enum<DNA.DNASymbol>
      mobios.type.DNA.DNASymbol

All Implemented Interfaces:

Externalizable, Serializable, Comparable<DNA.DNASymbol>, Symbol

Enclosing class:

DNA

public static enum DNA.DNASymbol
extends Enum<DNA.DNASymbol>
implements Symbol

Author:

Willard

Enum Constant Summary

A

B

C

D

G

H

K

M

N

R

S

T

V

W

Y

Field Summary

byte	byteValue Every symbol has a non-unique byteValue.

Method Summary

byte	byteValue()
String	description()
static int	distinctSize()
Symbol	getSymbol(String s)
void	readExternal(ObjectInput in)
String	stringValue()
static DNA.DNASymbol	valueOf(String name) Returns the enum constant of this type with the specified name.
static DNA.DNASymbol[]	values() Returns an array containing the constants of this enum type, in the order they're declared.
void	writeExternal(ObjectOutput out)

Methods inherited from class java.lang.Enum

compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

A

public static final DNA.DNASymbol A

C

public static final DNA.DNASymbol C

G

public static final DNA.DNASymbol G

T

public static final DNA.DNASymbol T

R

public static final DNA.DNASymbol R

Y

public static final DNA.DNASymbol Y

M

public static final DNA.DNASymbol M

K

public static final DNA.DNASymbol K

W

public static final DNA.DNASymbol W

S

public static final DNA.DNASymbol S

B

public static final DNA.DNASymbol B

D

public static final DNA.DNASymbol D

H

public static final DNA.DNASymbol H

V

public static final DNA.DNASymbol V

N

public static final DNA.DNASymbol N

Field Detail

byteValue

public byte byteValue

Every symbol has a non-unique byteValue. Some symbols may have the same byteValue if there is no difference between them in the WeightMatrix.

Method Detail

values

public static final DNA.DNASymbol[] values()

Returns an array containing the constants of this enum type, in the order they're declared. This method may be used to iterate over the constants as follows:

for(DNA.DNASymbol c : DNA.DNASymbol.values())
        System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they're declared

valueOf

public static DNA.DNASymbol valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

description

public String description()

Returns:

the String description of the Symbol

byteValue

public byte byteValue()

Specified by:

byteValue in interface Symbol

Returns:

stringValue

public String stringValue()

Specified by:

stringValue in interface Symbol

Returns:

getSymbol

public Symbol getSymbol(String s)

Specified by:

getSymbol in interface Symbol

Returns:

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Specified by:

writeExternal in interface Externalizable

Throws:

IOException

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Specified by:

readExternal in interface Externalizable

Throws:

IOException

ClassNotFoundException

distinctSize

public static int distinctSize()

Returns:

the number of Distinct byteValues for this set of Symbols.