Package mobios.dist

Interface Summary

Metric	Metric is a distance oracle.
WeightMatrix	A WeightMatrix is the substitution matrix of an Alphabetof Symbol objects.

Class Summary

CountedMetric	Wrapper around a base Metric that counts the invocations of Metric.getDistance(IndexObject,IndexObject).
ImageMetric	Computes the distance between images.
LMetric	This class computes the L family distance function on two vectors.
MSMetric	MSDataMetric implements the Metric interface.
MSMSConstants	Constant static default values for building indices on mass spectrometer data Code uses these as default, "tolerance" etc.
MSMSMetric	MSMSMetric is an implementation of a fuzzy cosine distance metric for comparing tandem spectra signatures.
SequenceFragmentMetric	Computes the distance between two Fragments.
SymmetricSubstitutionWeightMatrix	Implements a WeightMatrix by providing a symmetric substitution matrix of double distances for a given Alphabet.
WHDGlobalSequenceFragmentMetric	Computes global alignment on Fragments with Weighted Hamming Distance.