Dr. Miranker's Semantic Web projects concern data integration, the automated mapping of legacy relational databases to the Semantic Web,
In Bioinformatics, his specific current projects concern comparative RNA sequence analysis and Big Data methods applied to genome sequencing
Semantic Web and the application of machine learning methods to automate data integration
Database Query Languages
Research Labs & Affiliations:
The Miranker Lab
S. H. Tirmizi, S. Aitken D. Moreira, C. Mungall, J. Sequeda, N. H. Shah, D.P. Miranker. March 7 2011. Mapping between the OBO and OWL ontology languages. BMC. London, UK.
S. R. Ramakrishnan, C. Vogel, T. Kwon, L. O. Penalva, E. M. Marcotte, D. P. Miranker. July 24 2009. Mining gene functional networks to improve mass-spectrometry-based protein identification.. Oxford University Press. Oxford, England. 2955–2961.
S. R. Ramakrishnan, C. Vogel, J.T. Prince, R. Wang, Z. Li, L. O. Penalva, M. Myers, E. M. Marcotte, D. P. Miranker. March 24 2009. Integrating shotgun proteomics and mRNA expression data to improve protein identification.. Oxford University Press. Oxford, England. 1397–1403.
S. Bafna, J. Humphries, D. P. Miranker. 2008. Schema Driven Assignment and Implementation of Life Science Identifiers (LSIDs). Elsevier. Amsterdam, Netherlands. 730-738.
Shu Wang, Robin R. Gutell, and Daniel P. Miranker. October 6 2007. Biclustering As A Method For RNA Local Multiple Sequence Alignment. Oxford University Press. Oxford, England. 3289–3296.